View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12265_high_5 (Length: 283)
Name: NF12265_high_5
Description: NF12265
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12265_high_5 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 242; Significance: 1e-134; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 18 - 263
Target Start/End: Complemental strand, 34055450 - 34055205
Alignment:
| Q |
18 |
aatctattcatcaaaataagatccaatgggttgtgttgttcctgcagaacttagtttagatttaagaccaactttcgttcccaaaaccatcgctaatttc |
117 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34055450 |
aatctattcatcataataagatccaatgggttgtgttgttcctgcagaacttagtttagatttaagaccaactttcgttcccaaaaccatcgctaatttc |
34055351 |
T |
|
| Q |
118 |
ctctttcacctttccacaatccaaaccacctccgataaactctctaaactccatgatttcctctccagactcgaagatgaactcaataagatcgatgctt |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34055350 |
ctctttcacctttccacaatccaaaccacctccgataaactctctaaactccatgatttcctctccagactcgaagatgaactcaataagatcgatgctt |
34055251 |
T |
|
| Q |
218 |
tcaaacgtgaactacctctctccatgctcctcttaaacgacggttc |
263 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34055250 |
tcaaacgtgaactacctctctccatgctcctcttaaacgacggttc |
34055205 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University