View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12265_low_1 (Length: 488)
Name: NF12265_low_1
Description: NF12265
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12265_low_1 |
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Alignment Details
Target: chr2 (Bit Score: 444; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 444; E-Value: 0
Query Start/End: Original strand, 15 - 478
Target Start/End: Original strand, 1425063 - 1425526
Alignment:
| Q |
15 |
gacatcatagtagcttttaggaatattccaactcaaatattctatagataggatcatatgattgaagaattttaggaaatttcatatgtggtgatggttt |
114 |
Q |
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| T |
1425063 |
gacatcatagtagcttttaggaatattccaactcaaatattctatagataggatcatatgattgaagaattataggaaatttcatatatggtgatggttt |
1425162 |
T |
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| Q |
115 |
tctgcatcactaatttcatatcttgattgtttagtggtgagtgcttaatccaaaacttatggaattcacagatgaccagaattgatggtaataccgcgtg |
214 |
Q |
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| T |
1425163 |
tctgcatcactaatttcatatcttgattgtttagtggtgagtgcttaatccaaaacttatggaattcacagatgaccagaattgatggtaataccgcgtg |
1425262 |
T |
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| Q |
215 |
acataatctacaggacttcattatattagttagcctagtatttaagtgtatggtaataagtctgattagtgaaaattggggttcatgttacggtcctcag |
314 |
Q |
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| T |
1425263 |
acataatctacaggacttcattatattagttagcctagtatttaagtgtatgctaataagtctgattagtgaaaattggggttcatgttacggtcctcgg |
1425362 |
T |
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| Q |
315 |
tgtatcattatttcacattgcatagtggttgccaacgcttactttttatagatatgataatgttagttttcagggtttgaactctgaacctcgtgcttac |
414 |
Q |
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| T |
1425363 |
tgtatcattatttcacattgcatagtggttgccaacgcttactttttatagatatgataatgttagttttcagggtttgaaccctgaacctcgtgcttac |
1425462 |
T |
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| Q |
415 |
ttggtatcctactctaaacaagttattattttgcaactgaagattggttctttttagcacaggt |
478 |
Q |
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| T |
1425463 |
ttggtatcctactctaaacaagttattattttgcaactgaagattggttctttttagcacaggt |
1425526 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 60 - 165
Target Start/End: Original strand, 1438081 - 1438190
Alignment:
| Q |
60 |
agataggatcatatgattgaagaattttaggaaatttcatatgtggtgatggttttctgcatcacta-att---tcatatcttgattgtttagtggtgag |
155 |
Q |
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| T |
1438081 |
agataggatcatatgattgaagaattttagtaaatttcagatatagtgatggtgttctgcatcactagattaggttgtttcttgattgttcagtggttag |
1438180 |
T |
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| Q |
156 |
tgcttaatcc |
165 |
Q |
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| T |
1438181 |
tgcttaatcc |
1438190 |
T |
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