View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12265_low_3 (Length: 382)
Name: NF12265_low_3
Description: NF12265
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12265_low_3 |
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Alignment Details
Target: chr8 (Bit Score: 254; Significance: 1e-141; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 20 - 289
Target Start/End: Original strand, 9335482 - 9335751
Alignment:
| Q |
20 |
ctagcataaacggggctctacaatatactttcatcatgttctataaactcaattcctaaactcacgtcagttcacaaactatagattttgaacaatatta |
119 |
Q |
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| T |
9335482 |
ctagcataaacggggctctacaatatactttcatcatgttctataaactcaattcctaaactcacgtcagttcacaaactatagattttgaacaatatta |
9335581 |
T |
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| Q |
120 |
gaaaataaatcaaatgaaccatatgatttaaatatgcaaatgatccagtcagtagcggtcactagaggccaatatgaaatacaatgtacgggtttttgca |
219 |
Q |
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| T |
9335582 |
gaaaataaatcaaatgaaccatatgatttaaatatgcaaatgatccattcagtagcggtcaccagaggccaatatgaaatacaatgtacaggtttttgca |
9335681 |
T |
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| Q |
220 |
aaaacctgccacaagggccagtaactcaattcagtcatatggaaacataaatgatgaatgaaatcctcaa |
289 |
Q |
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| T |
9335682 |
aaaacctgctacaagggccagtaactcaattcagtcatatggaaacataaatgatgaatgaaatcctcaa |
9335751 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 323 - 363
Target Start/End: Original strand, 9336150 - 9336190
Alignment:
| Q |
323 |
aagtagaaatcaagtattaaattattatcacctccccgcat |
363 |
Q |
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| T |
9336150 |
aagtagaaatcaagtattaaattattatcacctccccgcat |
9336190 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 286 - 316
Target Start/End: Original strand, 9336026 - 9336056
Alignment:
| Q |
286 |
tcaaattcactcaaataaaaaatgttaaata |
316 |
Q |
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| T |
9336026 |
tcaaattcactcaaataaaaaatgttaaata |
9336056 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 57 - 135
Target Start/End: Original strand, 9942098 - 9942176
Alignment:
| Q |
57 |
gttctataaactcaattcctaaactcacgtcagttcacaaactatagattttgaacaatattagaaaataaatcaaatg |
135 |
Q |
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| T |
9942098 |
gttctacaaactcaattcctaaacttgcatcagtttacaacctctagattttgagcaaaattacagaataaagcaaatg |
9942176 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 70 - 140
Target Start/End: Original strand, 42364073 - 42364143
Alignment:
| Q |
70 |
aattcctaaactcacgtcagttcacaaactatagattttgaacaatattagaaaataaatcaaatgaacca |
140 |
Q |
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| T |
42364073 |
aattcctaaactcgcatcagtttaaacactctagattttgaacaaaattacaaaataaatcaaatgcacca |
42364143 |
T |
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