View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12265_low_4 (Length: 348)
Name: NF12265_low_4
Description: NF12265
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12265_low_4 |
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| [»] scaffold0092 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 57; Significance: 9e-24; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 11 - 75
Target Start/End: Complemental strand, 15050110 - 15050046
Alignment:
| Q |
11 |
cacagaagacctagtaccagcaccaccattgaaaccaccacgaagcaccagaaaccaacatagcc |
75 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
15050110 |
cacaaaagacctagtaccagcaccaccattgaaaccaccacgaagcaccacaaaccaacatagcc |
15050046 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 200 - 256
Target Start/End: Complemental strand, 15049921 - 15049865
Alignment:
| Q |
200 |
tatggccgactagtgaaccattaaccaccacccccataacgacctctcaccggcgca |
256 |
Q |
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| T |
15049921 |
tatggccgactagtgaaccattaaccaccacccccataacgacctctcaccgacgca |
15049865 |
T |
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Target: chr3 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 209 - 256
Target Start/End: Original strand, 1653874 - 1653921
Alignment:
| Q |
209 |
ctagtgaaccattaaccaccacccccataacgacctctcaccggcgca |
256 |
Q |
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| T |
1653874 |
ctagtgaaccattaacgaccacccccataacgacctctcactggcgca |
1653921 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 202 - 249
Target Start/End: Complemental strand, 26841854 - 26841807
Alignment:
| Q |
202 |
tggccgactagtgaaccattaaccaccacccccataacgacctctcac |
249 |
Q |
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| T |
26841854 |
tggccggctagtgaaccattaaccaccaccctcataacgacctctcac |
26841807 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 11 - 72
Target Start/End: Original strand, 15496008 - 15496069
Alignment:
| Q |
11 |
cacagaagacctagtaccagcaccaccattgaaaccaccacgaagcaccagaaaccaacata |
72 |
Q |
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| T |
15496008 |
cacaaaagaccaagtatcagcaccaccatgaaaaccaccacgaaacaccacaatccaacata |
15496069 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 11 - 51
Target Start/End: Original strand, 29099664 - 29099704
Alignment:
| Q |
11 |
cacagaagacctagtaccagcaccaccattgaaaccaccac |
51 |
Q |
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| T |
29099664 |
cacagaagacccagtatcagcaccaccatggaaaccaccac |
29099704 |
T |
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Target: scaffold0092 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0092
Description:
Target: scaffold0092; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 11 - 72
Target Start/End: Original strand, 23305 - 23366
Alignment:
| Q |
11 |
cacagaagacctagtaccagcaccaccattgaaaccaccacgaagcaccagaaaccaacata |
72 |
Q |
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| T |
23305 |
cacaaaagacctagtatcagcaccaccatggaaaccaccacaaagcaccacaaacgaacata |
23366 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 31 - 70
Target Start/End: Original strand, 30845559 - 30845598
Alignment:
| Q |
31 |
caccaccattgaaaccaccacgaagcaccagaaaccaaca |
70 |
Q |
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| T |
30845559 |
caccaccatggaaaccaccacgaagcaccataaaccaaca |
30845598 |
T |
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Target: chr5 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 31 - 70
Target Start/End: Complemental strand, 26331110 - 26331071
Alignment:
| Q |
31 |
caccaccattgaaaccaccacgaagcaccagaaaccaaca |
70 |
Q |
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| T |
26331110 |
caccaccatagaaaccaccacgaagcaccacaaaccaaca |
26331071 |
T |
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Target: chr4 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 16 - 70
Target Start/End: Complemental strand, 12469417 - 12469363
Alignment:
| Q |
16 |
aagacctagtaccagcaccaccattgaaaccaccacgaagcaccagaaaccaaca |
70 |
Q |
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||||||||||| |||||||||||| | |||||||| |||| |||| ||||||||| |
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| T |
12469417 |
aagacctagtatcagcaccaccatggtaaccaccatgaaggaccacaaaccaaca |
12469363 |
T |
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