View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12265_low_5 (Length: 318)
Name: NF12265_low_5
Description: NF12265
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12265_low_5 |
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| [»] scaffold0115 (1 HSPs) |
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| [»] scaffold0004 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 115; Significance: 2e-58; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 166 - 305
Target Start/End: Complemental strand, 41216346 - 41216205
Alignment:
| Q |
166 |
atatttgttaacgtgttaagtgtaaatcatagataggattgattggaatttgagttgtattttgttgataggttatttttatagtgaat--atatgttag |
263 |
Q |
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||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
41216346 |
atatttgtttacgtattaagtgtaaatcatagataggattgattggaatttgagttgtattttgttgataggttatttttatagtgaatatatatgttag |
41216247 |
T |
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| Q |
264 |
ttactctaggtttgtcatccttcatatataggtattgtgcac |
305 |
Q |
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| T |
41216246 |
ttactccaggtttgtcatcgttcatatataggtattgtgcac |
41216205 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 32 - 171
Target Start/End: Complemental strand, 41221591 - 41221451
Alignment:
| Q |
32 |
tcagatcttatttcctttcagtgttatattgaatttaaatatgctatcgannnnnnngttgctaaatgtctgatgtgaagaagcttatgacgaaagttga |
131 |
Q |
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| T |
41221591 |
tcagatcttatttcctttcagtgttatattgaatttaaatatgctatcgatttttttgttgctaaatgtctgatgtgaagaagcttatgacgaaagttga |
41221492 |
T |
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| Q |
132 |
taaagaaattattgatc-tttaacattgtcatttgatattt |
171 |
Q |
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| T |
41221491 |
taaagaaattattgatcttttaacattgtcatttgatattt |
41221451 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 85; Significance: 2e-40; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 105 - 262
Target Start/End: Original strand, 21757220 - 21757368
Alignment:
| Q |
105 |
tgtgaagaagcttatgacgaaagttgataaagaaattattgatctttaacattgtcatttgatatttgttaacgtgttaagtgtaaatcatagataggat |
204 |
Q |
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| T |
21757220 |
tgtgatgaagtttatgtcgaaagttgataaagaaattattgtt--------ttgtcgtttgatatttgttaacgtgttaagtgtaaatcatagaaaggat |
21757311 |
T |
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| Q |
205 |
tgattggaatttgagttgtattttgttgataggttatttttatagtgaatatatgtta |
262 |
Q |
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| T |
21757312 |
taattggaatttgagttgtattttggtgataggtt-gttttatagtgaatatatgtta |
21757368 |
T |
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Target: chr8 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 112 - 176
Target Start/End: Complemental strand, 25760919 - 25760855
Alignment:
| Q |
112 |
aagcttatgacgaaagttgataaagaaattattgatctttaacattgtcatttgatatttgttaa |
176 |
Q |
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| T |
25760919 |
aagcttatgtctgaagttgataaagaaattattgatctttaaaggtgtcatttgatatttgttaa |
25760855 |
T |
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Target: chr4 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 112 - 176
Target Start/End: Complemental strand, 16706601 - 16706537
Alignment:
| Q |
112 |
aagcttatgacgaaagttgataaagaaattattgatctttaacattgtcatttgatatttgttaa |
176 |
Q |
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| T |
16706601 |
aagcttatgtctgaagttgataaagaaattattgatctttaaaggtgtcatttgatatttgttaa |
16706537 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 112 - 176
Target Start/End: Original strand, 21601350 - 21601414
Alignment:
| Q |
112 |
aagcttatgacgaaagttgataaagaaattattgatctttaacattgtcatttgatatttgttaa |
176 |
Q |
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| T |
21601350 |
aagcttatgtctgaagttgataaagaaattattgatctttaaaggtgtcatttgatatttgttaa |
21601414 |
T |
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Target: chr7 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 258 - 305
Target Start/End: Complemental strand, 23922293 - 23922246
Alignment:
| Q |
258 |
tgttagttactctaggtttgtcatccttcatatataggtattgtgcac |
305 |
Q |
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||||||||| | ||||||||||||| |||||||||| ||||||||||| |
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| T |
23922293 |
tgttagttattttaggtttgtcatcgttcatatatatgtattgtgcac |
23922246 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 125 - 176
Target Start/End: Original strand, 8797008 - 8797059
Alignment:
| Q |
125 |
aagttgataaagaaattattgatctttaacattgtcatttgatatttgttaa |
176 |
Q |
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| T |
8797008 |
aagttgataaagaaacgattgatctttaaagttgttatttgatatttgttaa |
8797059 |
T |
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Target: scaffold0115 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0115
Description:
Target: scaffold0115; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 258 - 306
Target Start/End: Complemental strand, 37493 - 37445
Alignment:
| Q |
258 |
tgttagttactctaggtttgtcatccttcatatataggtattgtgcaca |
306 |
Q |
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| T |
37493 |
tgttagttactttaggtttgttatcgttcatatatacttattgtgcaca |
37445 |
T |
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Target: scaffold0004 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0004
Description:
Target: scaffold0004; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 258 - 306
Target Start/End: Complemental strand, 333877 - 333829
Alignment:
| Q |
258 |
tgttagttactctaggtttgtcatccttcatatataggtattgtgcaca |
306 |
Q |
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||||||||||| |||||||||||| |||||||||| ||||| |||||| |
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| T |
333877 |
tgttagttactttaggtttgtcattgttcatatatacgtattatgcaca |
333829 |
T |
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