View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12265_low_6 (Length: 291)
Name: NF12265_low_6
Description: NF12265
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12265_low_6 |
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Alignment Details
Target: chr8 (Bit Score: 168; Significance: 4e-90; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 168; E-Value: 4e-90
Query Start/End: Original strand, 1 - 214
Target Start/End: Original strand, 29115828 - 29116041
Alignment:
| Q |
1 |
ctaattgcttctataattaacgagaaaagtgagagaattttaaactggagatttaggcatcatgaagtgaaaccaagtgtataattaagttacggtttat |
100 |
Q |
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| T |
29115828 |
ctaattgcttctataattaacgagaaaagtgagagaattttaaactggagatttaggcagcatgaagtgaaaccaagtgtatga--aagttacggtttat |
29115925 |
T |
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| Q |
101 |
taaactagaaatgatacacatg---gatggttttgtagaattaaaattgagtaacaagttatggtttattaaaatagaacaggatttggaaccaaatgat |
197 |
Q |
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| T |
29115926 |
taaactagaaat-ataaacatgcaggatggttttgtagaattaaaattgagtaacaagttatggtttattaaaatagaacaggatttggaaccaaatgat |
29116024 |
T |
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| Q |
198 |
ctcatctaaattttata |
214 |
Q |
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| T |
29116025 |
ctcatctaagttttata |
29116041 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 242 - 273
Target Start/End: Original strand, 29116037 - 29116068
Alignment:
| Q |
242 |
ttataggaagatcaaggcattataaggttatt |
273 |
Q |
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| T |
29116037 |
ttataggaagatcaaggcattataaggttatt |
29116068 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 107 - 193
Target Start/End: Complemental strand, 13167675 - 13167588
Alignment:
| Q |
107 |
agaaatgatacacatggatggttttgtagaattaaaattgagtaacaagtta-tggtttattaaaatagaacaggatttggaaccaaa |
193 |
Q |
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| T |
13167675 |
agaaatgatagatatggatagttttgtagaactggaatagagtagcaagttactcgtttattaaaatagaataggatggggaaccaaa |
13167588 |
T |
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