View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12266_high_1 (Length: 497)

Name: NF12266_high_1
Description: NF12266
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12266_high_1
NF12266_high_1
[»] chr2 (15 HSPs)
chr2 (1-472)||(8394515-8394986)
chr2 (1-472)||(8412463-8412934)
chr2 (1-472)||(8434561-8435032)
chr2 (1-218)||(8406343-8406560)
chr2 (1-218)||(8395012-8395229)
chr2 (6-258)||(8431496-8431743)
chr2 (63-199)||(8417746-8417882)
chr2 (63-199)||(8375339-8375475)
chr2 (311-453)||(8431775-8431914)
chr2 (311-453)||(8406694-8406833)
chr2 (63-199)||(8439628-8439764)
chr2 (87-206)||(8368812-8368931)
chr2 (87-206)||(8400479-8400598)
chr2 (87-206)||(8422056-8422175)
chr2 (70-204)||(8404470-8404604)


Alignment Details
Target: chr2 (Bit Score: 460; Significance: 0; HSPs: 15)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 460; E-Value: 0
Query Start/End: Original strand, 1 - 472
Target Start/End: Complemental strand, 8394986 - 8394515
Alignment:
Q  1 ataaaagagcagaggacagtttcatagccataagtggtgcaccttccccgcttgtgacagctgcaacaccagacatggttgtagcagtgagagtaatcat 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  8394986 ataaaagagcagaggacagtttcatagccataagtggtgcaccttccccgtttgtgacagctgcaacaccagacatggttgtagcagtgagagtaatcat 8394887  T
Q  101 atttattgagtttaatagaagattattccagttgttacgttgttcgccaatgttgtgatgcatttctattctgtctaatacagcttccaagactgcatag 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  8394886 atttattgagtttaatagaagattattccagttgttacgttgttcgccaatgttgtgatgcatttctattctgtctgatacagcttccaagactgcatag 8394787  T
Q  201 agttgaactgtagcattagaatttgtagaatgcttttgttgttgatcttgtaatatttgtgtgatgttgttgttttctaataatggagtatttttgtact 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8394786 agttgaactgtagcattagaatttgtagaatgcttttgttgttgatcttgtaatatttgtgtgatgttgttgttttctaataatggagtatttttgtact 8394687  T
Q  301 gtttgattacttttagttcttgatcatcaacttgttttctagtttgtatctttgacaatgaaatatttgtgagttttgggagatggattgaagcattgat 400  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8394686 gtttgattacttttagttcttgatcatcaacttgttttctagtttgtatctttgacaatgaaatatttgtgagttttgggagatggattgaagcattgat 8394587  T
Q  401 tactctatttgaagacgacgataaagaacaagaaagtagaactgaagtttgtatcgaagacatgatatatat 472  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  8394586 tactctatttgaagacgacgataaagaacaagaaagtagaactgaagtttgtattgaagacatgatatatat 8394515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 416; E-Value: 0
Query Start/End: Original strand, 1 - 472
Target Start/End: Original strand, 8412463 - 8412934
Alignment:
Q  1 ataaaagagcagaggacagtttcatagccataagtggtgcaccttccccgcttgtgacagctgcaacaccagacatggttgtagcagtgagagtaatcat 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  8412463 ataaaagagcagaggacagtttcatagccataagtggtgcaccttccccgtttgtgacagctgcaacaccagacatggttgtagcagtgagagtaatcat 8412562  T
Q  101 atttattgagtttaatagaagattattccagttgttacgttgttcgccaatgttgtgatgcatttctattctgtctaatacagcttccaagactgcatag 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  8412563 atttattgagtttaatagaagattattccagttgttacgttgttcgccaatgttgtgatgcatttctattctgtctgatacagcttccaagactgcatag 8412662  T
Q  201 agttgaactgtagcattagaatttgtagaatgcttttgttgttgatcttgtaatatttgtgtgatgttgttgttttctaataatggagtatttttgtact 300  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8412663 agttgaactgtagcattagaaattgtagaatgcttttgttgttgatcttgtaatatttgtgtgatgttgttgttttctaataatggagtatttttgtact 8412762  T
Q  301 gtttgattacttttagttcttgatcatcaacttgttttctagtttgtatctttgacaatgaaatatttgtgagttttgggagatggattgaagcattgat 400  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  8412763 gtttgattacttttagttcttgatcatcaacttgttttctagtttgtatctttgacaatgaaatatttgtgagttttgggagatggattgaagcattaat 8412862  T
Q  401 tactctatttgaagacgacgataaagaacaagaaagtagaactgaagtttgtatcgaagacatgatatatat 472  Q
    |||| | |||||||| || |||||||||||||||| | |||||||||||||||   ||| ||||||||||||    
T  8412863 tactttctttgaagatgatgataaagaacaagaaattggaactgaagtttgtaataaagccatgatatatat 8412934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 416; E-Value: 0
Query Start/End: Original strand, 1 - 472
Target Start/End: Original strand, 8434561 - 8435032
Alignment:
Q  1 ataaaagagcagaggacagtttcatagccataagtggtgcaccttccccgcttgtgacagctgcaacaccagacatggttgtagcagtgagagtaatcat 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  8434561 ataaaagagcagaggacagtttcatagccataagtggtgcaccttccccgtttgtgacagctgcaacaccagacatggttgtagcagtgagagtaatcat 8434660  T
Q  101 atttattgagtttaatagaagattattccagttgttacgttgttcgccaatgttgtgatgcatttctattctgtctaatacagcttccaagactgcatag 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  8434661 atttattgagtttaatagaagattattccagttgttacgttgttcgccaatgttgtgatgcatttctattctgtctgatacagcttccaagactgcatag 8434760  T
Q  201 agttgaactgtagcattagaatttgtagaatgcttttgttgttgatcttgtaatatttgtgtgatgttgttgttttctaataatggagtatttttgtact 300  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8434761 agttgaactgtagcattagaaattgtagaatgcttttgttgttgatcttgtaatatttgtgtgatgttgttgttttctaataatggagtatttttgtact 8434860  T
Q  301 gtttgattacttttagttcttgatcatcaacttgttttctagtttgtatctttgacaatgaaatatttgtgagttttgggagatggattgaagcattgat 400  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  8434861 gtttgattacttttagttcttgatcatcaacttgttttctagtttgtatctttgacaatgaaatatttgtgagttttgggagatggattgaagcattaat 8434960  T
Q  401 tactctatttgaagacgacgataaagaacaagaaagtagaactgaagtttgtatcgaagacatgatatatat 472  Q
    |||| | |||||||| || |||||||||||||||| | |||||||||||||||   ||| ||||||||||||    
T  8434961 tactttctttgaagatgatgataaagaacaagaaattggaactgaagtttgtaataaagccatgatatatat 8435032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 1 - 218
Target Start/End: Original strand, 8406343 - 8406560
Alignment:
Q  1 ataaaagagcagaggacagtttcatagccataagtggtgcaccttccccgcttgtgacagctgcaacaccagacatggttgtagcagtgagagtaatcat 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  8406343 ataaaagagcagaggacagtttcatagccataagtggtgcaccttccccgtttgtgacagctgcaacaccagacatggttgtagcagtgagagtaatcat 8406442  T
Q  101 atttattgagtttaatagaagattattccagttgttacgttgttcgccaatgttgtgatgcatttctattctgtctaatacagcttccaagactgcatag 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  8406443 atttattgagtttaatagaagattattccagttgttacgttgttcgccaatgttgtgatgcatttctattctgtctgatacagcttccaagactgcatag 8406542  T
Q  201 agttgaactgtagcatta 218  Q
    ||||||||||||||||||    
T  8406543 agttgaactgtagcatta 8406560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 1 - 218
Target Start/End: Complemental strand, 8395229 - 8395012
Alignment:
Q  1 ataaaagagcagaggacagtttcatagccataagtggtgcaccttccccgcttgtgacagctgcaacaccagacatggttgtagcagtgagagtaatcat 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||    
T  8395229 ataaaagagcagaggacagtttcatagccataagtggtgcaccttccccgtttgtgacagctgcaactccagacatggttgtagcagtgagagtaatcat 8395130  T
Q  101 atttattgagtttaatagaagattattccagttgttacgttgttcgccaatgttgtgatgcatttctattctgtctaatacagcttccaagactgcatag 200  Q
     ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  8395129 ttttattgagtttaatagaagattattccagttgttacgttgttcgccaatgttgtgatgcatttctattctgtctgatacagcttccaagactgcatag 8395030  T
Q  201 agttgaactgtagcatta 218  Q
    ||||||||||||||||||    
T  8395029 agttgaactgtagcatta 8395012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 156; E-Value: 1e-82
Query Start/End: Original strand, 6 - 258
Target Start/End: Original strand, 8431496 - 8431743
Alignment:
Q  6 agagcagaggacagtttcatagccataagtggtgcaccttccccgcttgtgacagctgcaacaccagacatggttgtagcagtgagagtaatcatattta 105  Q
    |||||||| || ||||||| ||||| |||||||||| ||||||| |||||||||||||||||||||||||| ||  ||||||||||||||||||| ||||    
T  8431496 agagcagaagatagtttcagagccaaaagtggtgcaacttccccacttgtgacagctgcaacaccagacatagtcttagcagtgagagtaatcatgttta 8431595  T
Q  106 ttgagtttaatagaagattattccagttgttacgttgttcgccaatgttgtgatgcatttctattctgtctaatacagcttccaagactgcatagagttg 205  Q
    ||||||| || ||||||||||||||||||||||   ||||||||||||||||||||||||||||||||||| |||||||||| || ||||  ||||||||    
T  8431596 ttgagttcaaaagaagattattccagttgttac---gttcgccaatgttgtgatgcatttctattctgtctgatacagcttctaaaactg--tagagttg 8431690  T
Q  206 aactgtagcattagaatttgtagaatgcttttgttgttgatcttgtaatattt 258  Q
    || ||| || |||||||||||||||||||||||||||||||||||||||||||    
T  8431691 aattgtggctttagaatttgtagaatgcttttgttgttgatcttgtaatattt 8431743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 63 - 199
Target Start/End: Original strand, 8417746 - 8417882
Alignment:
Q  63 gcaacaccagacatggttgtagcagtgagagtaatcatatttattgagtttaatagaagattattccagttgttacgttgttcgccaatgttgtgatgca 162  Q
    |||| ||||||||||||||||||||||||||||||||| || || || || || |||||| | ||||| ||||||||| |||| | ||||||||||||||    
T  8417746 gcaagaccagacatggttgtagcagtgagagtaatcatgttgatggaattcaagagaagagtgttccaattgttacgtagttcacaaatgttgtgatgca 8417845  T
Q  163 tttctattctgtctaatacagcttccaagactgcata 199  Q
    |||| ||||||||  | ||| ||||||||||||||||    
T  8417846 tttcaattctgtcagaaacaacttccaagactgcata 8417882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 63 - 199
Target Start/End: Complemental strand, 8375475 - 8375339
Alignment:
Q  63 gcaacaccagacatggttgtagcagtgagagtaatcatatttattgagtttaatagaagattattccagttgttacgttgttcgccaatgttgtgatgca 162  Q
    |||||||||||||||||||||||||| ||||||||||| || || ||||| || |||||| | ||||| |||||||| |||||||||||||| |||||||    
T  8375475 gcaacaccagacatggttgtagcagtaagagtaatcatgttgatggagttcaagagaagagtgttccaattgttacgctgttcgccaatgttttgatgca 8375376  T
Q  163 tttctattctgtctaatacagcttccaagactgcata 199  Q
    |||| | ||| ||  | || |||||||||| ||||||    
T  8375375 tttcaactctatcagaaactgcttccaagattgcata 8375339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 311 - 453
Target Start/End: Original strand, 8431775 - 8431914
Alignment:
Q  311 ttttagttcttgatcatcaacttgttttctagtttgtatctttgacaatgaaatatttgtgagttttgggagatggattgaagcattgattactctattt 410  Q
    ||||| |||||||||| ||||||||||||| ||||| ||  ||| |||||||||||||| ||||||||| ||||  |||| |||||| |||||||| |||    
T  8431775 ttttaattcttgatcaacaacttgttttctggtttgaatagttggcaatgaaatatttgggagttttggaagattaattgcagcattaattactctcttt 8431874  T
Q  411 gaagacgacgataaagaacaagaaagtagaactgaagtttgta 453  Q
    |||   || |||||||||||||||  |||||||||||||||||    
T  8431875 gaa---gatgataaagaacaagaagttagaactgaagtttgta 8431914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 311 - 453
Target Start/End: Original strand, 8406694 - 8406833
Alignment:
Q  311 ttttagttcttgatcatcaacttgttttctagtttgtatctttgacaatgaaatatttgtgagttttgggagatggattgaagcattgattactctattt 410  Q
    ||||| |||||||||| ||||||||||||| ||||| ||  ||| |||||||||||||| ||||||||| ||||  |||| ||| || |||||||| |||    
T  8406694 ttttaattcttgatcaacaacttgttttctggtttgaatagttggcaatgaaatatttgggagttttggaagattaattgcagcgttaattactctcttt 8406793  T
Q  411 gaagacgacgataaagaacaagaaagtagaactgaagtttgta 453  Q
    |||   || |||||||||||||||  |||||||||||||||||    
T  8406794 gaa---gatgataaagaacaagaagttagaactgaagtttgta 8406833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 63 - 199
Target Start/End: Original strand, 8439628 - 8439764
Alignment:
Q  63 gcaacaccagacatggttgtagcagtgagagtaatcatatttattgagtttaatagaagattattccagttgttacgttgttcgccaatgttgtgatgca 162  Q
    |||||||||||||||||||||||||| ||||||||||| || || ||||| || |||||| | ||||| ||| |||| |||||||||||||| |||||||    
T  8439628 gcaacaccagacatggttgtagcagtaagagtaatcatgttgatggagttcaagagaagagtgttccaattgctacgctgttcgccaatgttttgatgca 8439727  T
Q  163 tttctattctgtctaatacagcttccaagactgcata 199  Q
    |||| | ||| ||  | || |||||||||| ||||||    
T  8439728 tttcaactctatcagaaactgcttccaagattgcata 8439764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 87 - 206
Target Start/End: Original strand, 8368812 - 8368931
Alignment:
Q  87 gtgagagtaatcatatttattgagtttaatagaagattattccagttgttacgttgttcgccaatgttgtgatgcatttctattctgtctaatacagctt 186  Q
    |||||||| ||||| || || ||||||||||||||  ||||||| || |  ||||||||||||||||| ||||||||||||||||||||  |||||| ||    
T  8368812 gtgagagtgatcatgttgatggagtttaatagaagggtattccaattatcgcgttgttcgccaatgttttgatgcatttctattctgtcggatacagatt 8368911  T
Q  187 ccaagactgcatagagttga 206  Q
    | |  | |||||||||||||    
T  8368912 caagaattgcatagagttga 8368931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 87 - 206
Target Start/End: Complemental strand, 8400598 - 8400479
Alignment:
Q  87 gtgagagtaatcatatttattgagtttaatagaagattattccagttgttacgttgttcgccaatgttgtgatgcatttctattctgtctaatacagctt 186  Q
    |||||||| ||||| || || ||||||||||||||  ||||||| || |  ||||||||||||||||| ||||||||||||||||||||  |||||| ||    
T  8400598 gtgagagtgatcatgttgatggagtttaatagaagggtattccaattatcgcgttgttcgccaatgttttgatgcatttctattctgtcggatacagatt 8400499  T
Q  187 ccaagactgcatagagttga 206  Q
    | |  | |||||||||||||    
T  8400498 caagaattgcatagagttga 8400479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 87 - 206
Target Start/End: Complemental strand, 8422175 - 8422056
Alignment:
Q  87 gtgagagtaatcatatttattgagtttaatagaagattattccagttgttacgttgttcgccaatgttgtgatgcatttctattctgtctaatacagctt 186  Q
    |||||||| ||||| || || ||||||||||||||  ||||||| || |  ||||||||||||||||| ||||||||||||||||||||  |||||| ||    
T  8422175 gtgagagtgatcatgttgatggagtttaatagaagggtattccaattatcgcgttgttcgccaatgttttgatgcatttctattctgtcggatacagatt 8422076  T
Q  187 ccaagactgcatagagttga 206  Q
    | |  | |||||||||||||    
T  8422075 caagaattgcatagagttga 8422056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 70 - 204
Target Start/End: Original strand, 8404470 - 8404604
Alignment:
Q  70 cagacatggttgtagcagtgagagtaatcatatttattgagtttaatagaagattattccagttgttacgttgttcgccaatgttgtgatgcatttctat 169  Q
    ||||||| |||| ||| ||||| || ||||| || || |||||||||| |||  | ||||| |||| ||||||||  || | ||| | ||||||||| ||    
T  8404470 cagacattgttgaagctgtgagtgttatcatgttgatggagtttaataaaagcgtgttccaattgtcacgttgttgtcctaagtttttatgcatttcaat 8404569  T
Q  170 tctgtctaatacagcttccaagactgcatagagtt 204  Q
    ||||||| ||||||| ||| | | |||||||||||    
T  8404570 tctgtctgatacagcctccgaaattgcatagagtt 8404604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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