View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12266_low_1 (Length: 584)
Name: NF12266_low_1
Description: NF12266
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12266_low_1 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 554; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 554; E-Value: 0
Query Start/End: Original strand, 19 - 584
Target Start/End: Original strand, 38532633 - 38533198
Alignment:
| Q |
19 |
attatcctctccaacaaagaaaactattcataggattaacaacaattggattaatagcagctgcattgttcatagccacagcgatcacaaccttcggtac |
118 |
Q |
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| T |
38532633 |
attatcctctccaacaaagaaaactattcataggattaacaacaattggattaatagtagctgcattgttcatagccacagcgatcacaaccttcggtac |
38532732 |
T |
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| Q |
119 |
atcctcatcactacattgtccaatctcctcctcgatccgagcccgatcaaacgacgacaacaatccctcaccgatccaactaagagccattcttcactac |
218 |
Q |
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| T |
38532733 |
atcctcatcactacattgtccaatctcctcctcgatccgagcccgatcaaacgaggacaacaatccctcaccgatccaactaagagccattcttcactac |
38532832 |
T |
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| Q |
219 |
gccacatcacgtgttgttcctcaacaatcggtctcagagatcaagatcagtttcgatgtcttaaaaacctacgatcgaccatgcaactttcttgtcttcg |
318 |
Q |
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| T |
38532833 |
gccacatcacgtgttgttcctcaacaatcggtctcagagatcaagatcagtttcgatgtcttaaaaacctacgatcgaccatgcaactttcttgtcttcg |
38532932 |
T |
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| Q |
319 |
gacttggccatgattctctcatgtgggcttcgtttaacccaggtggcaacacattattccttgaagaagatcctaaatgggttcaaaccgttcttaaaga |
418 |
Q |
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| T |
38532933 |
gacttggccatgattctctcatgtgggcttcgtttaacccaggtggcaacacattattccttgaagaagatcctaaatgggttcaaaccgttcttaaaga |
38533032 |
T |
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| Q |
419 |
tgcaccgggccttcgagcccataccgttcgttatcgaacccagcttcgtgaagccaacaaactcatctcctcctaccgcaaggaacctatgtgttcacct |
518 |
Q |
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| T |
38533033 |
tgcaccgggccttcgagcccataccgttcgttatcgaacccagcttcgtgaagccagcaaactcatctcctcctaccgcaaggaacctatgtgttcacct |
38533132 |
T |
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| Q |
519 |
tctaaagcttttctacgtggaaacaaagcatgcaagcttgcgcttgagaatttacccgatgaggtt |
584 |
Q |
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| T |
38533133 |
tctaaagcttttctacgtggaaacaaagcatgcaagcttgcgcttgagaatttacccgatgaggtt |
38533198 |
T |
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Target: chr8 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 381 - 426
Target Start/End: Complemental strand, 34715467 - 34715422
Alignment:
| Q |
381 |
gaagaagatcctaaatgggttcaaaccgttcttaaagatgcaccgg |
426 |
Q |
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| T |
34715467 |
gaagaagatcctaaatgggttcaaaccgttctcaaagacgcaccgg |
34715422 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 297 - 394
Target Start/End: Original strand, 10188847 - 10188944
Alignment:
| Q |
297 |
ccatgcaactttcttgtcttcggacttggccatgattctctcatgtgggcttcgtttaacccaggtggcaacacattattccttgaagaagatcctaa |
394 |
Q |
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| T |
10188847 |
ccatgcaactttctcgtgtttggaattggtcacgacgcactcatgtgggattcgtttaatccacgtggcatcacactatatctcgaagaagatcctaa |
10188944 |
T |
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