View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12266_low_3 (Length: 404)
Name: NF12266_low_3
Description: NF12266
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12266_low_3 |
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Alignment Details
Target: chr2 (Bit Score: 204; Significance: 1e-111; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 10 - 289
Target Start/End: Original strand, 43468318 - 43468596
Alignment:
| Q |
10 |
cacagacattcttaaagaagggttaacctaggttctgaagacaaatgtatgtattcattattttatggtaagaaaatcaatcaattatgagaaaatatat |
109 |
Q |
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| T |
43468318 |
cacagacattcttaaagaagggttaacctaggttctgaagacaaatgtatgtattcattattttatggtaagaaaaccaatcgattatgagaaaatatat |
43468417 |
T |
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| Q |
110 |
tcaacaaaatggatatatagcttactgttacacattccagaagtcttttatattaacgaccaatcaaaaaagtatatatatgtgcgtgtgcctatctgcg |
209 |
Q |
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| T |
43468418 |
tcaacaaaatagatatatagcttactgttacacattccagaagtcttctatattaacgaccaatcaaaaaataatgtttgtttctatgag-ctatctgtg |
43468516 |
T |
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| Q |
210 |
tggatatgtatgtaaactgaatatttaggtctgataaaagattgatacatgtttgtttctatgagcataattcagttata |
289 |
Q |
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| T |
43468517 |
tggatatgtatgtaaactgaatatttaggtctcataaaagactgatacatgtttgtttctatgagcataattcagttata |
43468596 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 290 - 389
Target Start/End: Original strand, 43468636 - 43468735
Alignment:
| Q |
290 |
tgagactatccacttattcatattaagaaagtgaatttctaaccactaaataatttgataaaaaataataatatatttgtataatcatagggctcttagt |
389 |
Q |
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| T |
43468636 |
tgagactatccacttatttctattaagaaagtgaatttataaccactgaattatttgataaaaaataataatatatttgtataatcatagggctcttagt |
43468735 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 13 - 55
Target Start/End: Original strand, 43477388 - 43477430
Alignment:
| Q |
13 |
agacattcttaaagaagggttaacctaggttctgaagacaaat |
55 |
Q |
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| T |
43477388 |
agacattcttaacgaagggttaacctagattctgaagacaaat |
43477430 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 300 - 356
Target Start/End: Complemental strand, 19208900 - 19208844
Alignment:
| Q |
300 |
cacttattcatattaagaaagtgaatttctaaccactaaataatttgataaaaaata |
356 |
Q |
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| T |
19208900 |
cacttattcactttaaaaatgtgaatttctaaccactaaaccatttgacaaaaaata |
19208844 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 298 - 354
Target Start/End: Complemental strand, 382095 - 382039
Alignment:
| Q |
298 |
tccacttattcatattaagaaagtgaatttctaaccactaaataatttgataaaaaa |
354 |
Q |
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| T |
382095 |
tccacttattcattttaaaaaggtgaatctctaaccgctaaattatttgacaaaaaa |
382039 |
T |
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