View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12266_low_4 (Length: 287)
Name: NF12266_low_4
Description: NF12266
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12266_low_4 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 204; Significance: 1e-111; HSPs: 17)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 1 - 269
Target Start/End: Original strand, 27523983 - 27524259
Alignment:
| Q |
1 |
atgtagaatggtttctgttgatcaattgttatccatagccatgtagtcacttaccagctggacatcagcattatcataatgaagaaaacatgtctgaagc |
100 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27523983 |
atgtagaatggtttatgttgatcaattgttatccatagccatgtagacacttaccagctggacatcagcattatcataatgaagaaaacatgtctgaagc |
27524082 |
T |
|
| Q |
101 |
atgtttacaaaattatgaagtacaccaattaaatcatcaacaaatatgaggtt--------gcacatctcatttggtagcaagtggaagctttgtattgg |
192 |
Q |
| |
|
|||||||| ||||||||||| | |||||||||||||| || |||||||| ||| ||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
27524083 |
atgtttacgaaattatgaaggaaaccaattaaatcatgaagaaatatgacgttgcacttgagcacatctcatttggtagcaattggaagctttgtattgg |
27524182 |
T |
|
| Q |
193 |
acattgtttaagaaggtagggtacactcgaagacaacaccacatgctaccttatccctatgatctatatccttcaac |
269 |
Q |
| |
|
| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27524183 |
atattgtttaagaaggtagggtacactctaagacaacaccacatgctaccttatccctatgatctatatccttcaac |
27524259 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 164; E-Value: 1e-87
Query Start/End: Original strand, 1 - 268
Target Start/End: Complemental strand, 27469018 - 27468742
Alignment:
| Q |
1 |
atgtagaatggtttctgttgatcaattgttatccatagccatgtagtcacttaccagctggacatcagcattatcataatgaagaaaacatgtctgaagc |
100 |
Q |
| |
|
|||||||||||||| ||||||| |||||||||||| ||| | |||||||||||||||| ||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
27469018 |
atgtagaatggtttgagttgatctattgttatccatggccttatagtcacttaccagcttcacatcggcattatcataatgaagaaaacatgtctgaagc |
27468919 |
T |
|
| Q |
101 |
atgtttacaaaattatgaagtacaccaattaaatcatcaacaaatatgaggtt--------gcacatctcatttggtagcaagtggaagctttgtattgg |
192 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| || |||||||||| | ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27468918 |
atgtttacaaaattatgaagtacaccaattaaatcatgaagaaatatgaggctgcacttgagcacatctcatttggtagcaagtggaagctttgtattgg |
27468819 |
T |
|
| Q |
193 |
aca-ttgtttaagaaggtagggtacactcgaagacaacaccacatgctaccttatccctatgatctatatccttcaa |
268 |
Q |
| |
|
||| ||||||||||||||||||||||||| ||||||||||||||| |||||||||||||| ||| ||||| |||| |
|
|
| T |
27468818 |
acatttgtttaagaaggtagggtacactcttagacaacaccacatgagaccttatccctatgctctctatccatcaa |
27468742 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 162; E-Value: 2e-86
Query Start/End: Original strand, 4 - 268
Target Start/End: Original strand, 27514355 - 27514619
Alignment:
| Q |
4 |
tagaatggtttctgttgatcaattgttatccatagccatgtagtcacttaccagctggacatcagcattatcataatgaagaaaacatgtctgaagcatg |
103 |
Q |
| |
|
||||||||||| ||||| | ||||||||| || || | ||||||||||| |||||||||||||||||||||||||| ||||||||||||| ||||||| |
|
|
| T |
27514355 |
tagaatggtttatgttgttatattgttatctatggcattatagtcacttactagctggacatcagcattatcataatgcagaaaacatgtctaaagcatg |
27514454 |
T |
|
| Q |
104 |
tttacaaaattatgaagtacaccaattaaatcatcaacaaatatgaggttgcacatctcatttggtagcaagtggaagctttgtattggaca-ttgttta |
202 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| || |||||||||| || |||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
27514455 |
tttacaaaattatgaagtacaccaattaaatcatgaagaaatatgaggctg-acatctcatttggtagcaagtggaagctttgtattggacatttgttta |
27514553 |
T |
|
| Q |
203 |
agaaggtagggtacactcgaagacaacaccacatgctaccttatccctatgatctatatccttcaa |
268 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||| |||||||||||||| ||| ||||| |||| |
|
|
| T |
27514554 |
agaaggtagggtacactcttagacaacaccacatgagaccttatccctatgctctctatccatcaa |
27514619 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 16 - 266
Target Start/End: Original strand, 27503399 - 27503655
Alignment:
| Q |
16 |
tgttgatcaattgttatccatagccatgtagtcacttaccagctggacatcagcattatcataatgaagaaaacatgtctgaagcatgtttacaaaatta |
115 |
Q |
| |
|
|||||||| |||||||||||| ||| | |||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27503399 |
tgttgatctattgttatccattgccttatagtcacttatcagctggacatcaacattatcataatgaagaaaacatgtctgaagcatgtttacaaaatta |
27503498 |
T |
|
| Q |
116 |
tgaagtacaccaattaaatcatcaacaaatatgagg------ttg--cacatctcatttggtagcaagtggaagctttgtattggacattgtttaag-aa |
206 |
Q |
| |
|
| || | ||||||||||| ||||||||||||| ||| ||||||| |||| |||||||||||||||||||||||||||||||||| | || |
|
|
| T |
27503499 |
t---tgacgctaattaaatcatgaacaaatatgaggctatacttgatcacatcttattttttagcaagtggaagctttgtattggacattgtttaggaaa |
27503595 |
T |
|
| Q |
207 |
ggtagggtacactcgaagacaacaccacatgctaccttatccctatgatctatatccttc |
266 |
Q |
| |
|
||||||| |||||| |||||||||||||||||||| ||||||||||||||| |||||||| |
|
|
| T |
27503596 |
ggtaggggacactctaagacaacaccacatgctacattatccctatgatctctatccttc |
27503655 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 1 - 268
Target Start/End: Complemental strand, 27476248 - 27475975
Alignment:
| Q |
1 |
atgtagaatggtttctgttgatcaattgttatccatagccatgtagtcacttaccagctggacatcagcattatcataatgaagaaaacatgtctgaagc |
100 |
Q |
| |
|
|||||||||||||| |||||||| |||||||||||| || | |||||| |||||||| ||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
27476248 |
atgtagaatggtttatgttgatctattgttatccatgtccttagagtcacataccagcttcacatcggcattatcataatgaagaaaacatgtctgaagc |
27476149 |
T |
|
| Q |
101 |
atgtttacaaaattatgaagtacaccaattaaatcatcaacaaatatgagg------ttg--cacatctcatttggtagcaagtggaagctttgtattgg |
192 |
Q |
| |
|
||| |||||||||||| || | ||||||||||| ||||||||||||| ||| ||||||| |||| |||||||||||||||||||||||| |
|
|
| T |
27476148 |
atgcttacaaaattat---tgacgctaattaaatcatgaacaaatatgaggctatacttgatcacatcttattttttagcaagtggaagctttgtattgg |
27476052 |
T |
|
| Q |
193 |
acattgtttaag-aaggtagggtacactcgaagacaacaccacatgctaccttatccctatgatctatatccttcaa |
268 |
Q |
| |
|
|||||||||| | |||||||||||||||| ||||||||||| ||||||||||||||||| || ||| ||||| |||| |
|
|
| T |
27476051 |
acattgtttaggaaaggtagggtacactctaagacaacaccccatgctaccttatccctgtgctctctatccatcaa |
27475975 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 87; E-Value: 9e-42
Query Start/End: Original strand, 156 - 266
Target Start/End: Original strand, 27508488 - 27508598
Alignment:
| Q |
156 |
acatctcatttggtagcaagtggaagctttgtattggacattgtttaagaaggtagggtacactcgaagacaacaccacatgctaccttatccctatgat |
255 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||| ||||| | |
|
|
| T |
27508488 |
acatctcatttggtaggaagtggaagctttgtattggacattgtttaagaaggtagggtacactctaagacagcaccacatgctaccttatcactatgct |
27508587 |
T |
|
| Q |
256 |
ctatatccttc |
266 |
Q |
| |
|
|| |||||||| |
|
|
| T |
27508588 |
ctctatccttc |
27508598 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 1 - 120
Target Start/End: Original strand, 27508367 - 27508486
Alignment:
| Q |
1 |
atgtagaatggtttctgttgatcaattgttatccatagccatgtagtcacttaccagctggacatcagcattatcataatgaagaaaacatgtctgaagc |
100 |
Q |
| |
|
||||||||||||||||||||||| ||||||||| || ||| | ||||||||||| ||||||||||||||||| |||||||||||||||||||||| ||| |
|
|
| T |
27508367 |
atgtagaatggtttctgttgatctattgttatctatggccttatagtcacttactagctggacatcagcattgtcataatgaagaaaacatgtcttcagc |
27508466 |
T |
|
| Q |
101 |
atgtttacaaaattatgaag |
120 |
Q |
| |
|
||||||| |||||||||||| |
|
|
| T |
27508467 |
atgtttataaaattatgaag |
27508486 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 1 - 118
Target Start/End: Complemental strand, 27557079 - 27556962
Alignment:
| Q |
1 |
atgtagaatggtttctgttgatcaattgttatccatagccatgtagtcacttaccagctggacatcagcattatcataatgaagaaaacatgtctgaagc |
100 |
Q |
| |
|
|||||||||||||| |||||||| |||||||||||| || | || |||||||||||||||| |||| || |||||||||||||||||||||||| |||| |
|
|
| T |
27557079 |
atgtagaatggtttatgttgatctattgttatccattgcgttataatcacttaccagctggaaatcaacactatcataatgaagaaaacatgtctaaagc |
27556980 |
T |
|
| Q |
101 |
atgtttacaaaattatga |
118 |
Q |
| |
|
|||||||||||||||||| |
|
|
| T |
27556979 |
atgtttacaaaattatga |
27556962 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 1 - 111
Target Start/End: Complemental strand, 27497969 - 27497858
Alignment:
| Q |
1 |
atgtagaatggtttctgttgatcaattgttatccatagccatgtag-tcacttaccagctggacatcagcattatcataatgaagaaaacatgtctgaag |
99 |
Q |
| |
|
|||||||||||||| |||||||| ||||||||||| ||| | || ||||||||||||| ||||||| |||||||||||||||||||||||||| ||| |
|
|
| T |
27497969 |
atgtagaatggtttatgttgatctattgttatccactgccttatatctcacttaccagctagacatcaacattatcataatgaagaaaacatgtcctaag |
27497870 |
T |
|
| Q |
100 |
catgtttacaaa |
111 |
Q |
| |
|
| |||||||||| |
|
|
| T |
27497869 |
cctgtttacaaa |
27497858 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #10
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 47 - 156
Target Start/End: Original strand, 27489616 - 27489723
Alignment:
| Q |
47 |
tcacttaccagctggacatcagcattatcataatgaagaaaacatgtctgaagcatgtttacaaaattatgaagtacaccaattaaatcatcaacaaata |
146 |
Q |
| |
|
||||| |||||||||||||| |||| |||||||||||||||||||||| ||||||||||||||||||| |||| ||||||||| ||| || ||||| |
|
|
| T |
27489616 |
tcactaaccagctggacatcgacattttcataatgaagaaaacatgtctaaagcatgtttacaaaattacaaagt--accaattaatgcatgaataaata |
27489713 |
T |
|
| Q |
147 |
tgaggttgca |
156 |
Q |
| |
|
|||||||||| |
|
|
| T |
27489714 |
tgaggttgca |
27489723 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #11
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 56 - 121
Target Start/End: Original strand, 27506260 - 27506325
Alignment:
| Q |
56 |
agctggacatcagcattatcataatgaagaaaacatgtctgaagcatgtttacaaaattatgaagt |
121 |
Q |
| |
|
||||||||||||||| | | ||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
27506260 |
agctggacatcagcactttgataatgaagaaaacatgtctgaaacatgtttacaaaattatgaagt |
27506325 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #12
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 56 - 121
Target Start/End: Complemental strand, 27479464 - 27479399
Alignment:
| Q |
56 |
agctggacatcagcattatcataatgaagaaaacatgtctgaagcatgtttacaaaattatgaagt |
121 |
Q |
| |
|
||||||||||||||| || ||||||||||||||||||||||| |||||||||| ||||||||||| |
|
|
| T |
27479464 |
agctggacatcagcaccatgataatgaagaaaacatgtctgaaacatgtttacacaattatgaagt |
27479399 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #13
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 59 - 121
Target Start/End: Complemental strand, 27486521 - 27486459
Alignment:
| Q |
59 |
tggacatcagcattatcataatgaagaaaacatgtctgaagcatgtttacaaaattatgaagt |
121 |
Q |
| |
|
||||||||| || | | ||||||||||||||||||||||| |||||||||| ||||||||||| |
|
|
| T |
27486521 |
tggacatcaacactttaataatgaagaaaacatgtctgaaacatgtttacacaattatgaagt |
27486459 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #14
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 66 - 123
Target Start/End: Original strand, 27526689 - 27526747
Alignment:
| Q |
66 |
cagcattatcataatgaagaaaa-catgtctgaagcatgtttacaaaattatgaagtac |
123 |
Q |
| |
|
||||||||||||||||||||||| |||||||||| |||||| |||||||||||||||| |
|
|
| T |
27526689 |
cagcattatcataatgaagaaaaacatgtctgaacaatgttttcaaaattatgaagtac |
27526747 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #15
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 49 - 123
Target Start/End: Complemental strand, 27554174 - 27554101
Alignment:
| Q |
49 |
acttaccagctggacatcagcattatcataatgaagaaaacatgtctgaagcatgtttacaaaattatgaagtac |
123 |
Q |
| |
|
|||||||||||||| |||| |||||||| ||||||| |||||||||| | ||||||| |||||||||||||||| |
|
|
| T |
27554174 |
acttaccagctggagatcaacattatcaaaatgaag-aaacatgtcttagacatgtttgcaaaattatgaagtac |
27554101 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #16
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 52 - 119
Target Start/End: Original strand, 27431871 - 27431937
Alignment:
| Q |
52 |
taccagctggacatcagcattatcataatgaagaaaacatgtctgaagcatgtttacaaaattatgaa |
119 |
Q |
| |
|
|||||||||||||||| |||||||| |||||| |||||||| | | ||||||||||||||||||||| |
|
|
| T |
27431871 |
taccagctggacatcaacattatcaagatgaag-aaacatgtataatgcatgtttacaaaattatgaa |
27431937 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #17
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 159 - 240
Target Start/End: Original strand, 27517369 - 27517451
Alignment:
| Q |
159 |
tctcatttggtagcaagtggaagctttgtattggacattgtttaagaaggtagggtacactc-gaagacaacaccacatgcta |
240 |
Q |
| |
|
||||| ||||| |||||||||||||||| |||| |||||||| ||||||| ||||||| || |||||||| |||||||||| |
|
|
| T |
27517369 |
tctcaattggttccaagtggaagctttgtgttggccattgtttgagaaggtggggtacaatcttaagacaacgccacatgcta |
27517451 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University