View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12267_high_2 (Length: 576)
Name: NF12267_high_2
Description: NF12267
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12267_high_2 |
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Alignment Details
Target: chr1 (Bit Score: 492; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 492; E-Value: 0
Query Start/End: Original strand, 8 - 562
Target Start/End: Original strand, 13877771 - 13878313
Alignment:
| Q |
8 |
aagcagagaatgatggaaaaacctttcacattgtagcctgtaatccaatgataaatgccattaataagaatgttgtatttgttaggtcgtttggaataat |
107 |
Q |
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| T |
13877771 |
aagcagagaatgatggaaaaacctttcacattgtagcctgtaatccaatgataaatgccattaacaagaatgttgtatttgttaggtcgtttggaataat |
13877870 |
T |
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| Q |
108 |
atcgcatggtggctcgcatggtggcttgatccggaggaagagtagggttatggataattgtccacgatttatcgctaagattgtaaatttccagtgatga |
207 |
Q |
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| T |
13877871 |
atcgcatggtggctcgcatggtggcttgatccggaggaagagtagggttatggataattgtccacgatttatctctaagattgtaaatttccagtgatga |
13877970 |
T |
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| Q |
208 |
aagagaaaagacaaagcgtttttcacggttgacattgagtttgacaactttgaaatcgttggtgttgtgtttggcaccgaaaccaatcaagtattctgga |
307 |
Q |
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| T |
13877971 |
aagagaaaagacaaagcgtttttcacggttgacattgagtttgacaactttgaaatcgttggtgttgtgtttggcaccgaaaccaatcaagtattctgga |
13878070 |
T |
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| Q |
308 |
tgaagaatataggaggaggctggatgtgggggtacaaaatggacctctctagtggtagggttccaaagaattaagcttaggttataatcataatcatatt |
407 |
Q |
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| T |
13878071 |
t---gaatat---aggaggctggatgtgggggtacaaaatggacctctctagtggtagggttccaaagaattaagcttagggtataatcataatcatatt |
13878164 |
T |
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| Q |
408 |
ccaaacataaaataccattacaatgaccgtatattttgattattcgtatggggatgtttttcggaaagagggatttgatgaggttgggtgttggtgttgg |
507 |
Q |
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| T |
13878165 |
ccaaacataaaataccattacaatgaccgtatattttgattattcgtatggggatgtttttcggaaagagggatttgatgaggttg------ggtgttgg |
13878258 |
T |
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| Q |
508 |
tgttgggtgttgaggtaaagagagaagcattaggtgggtttctaggcaagttgat |
562 |
Q |
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| T |
13878259 |
tgttgggtgttgaggtaaagagagaagcattaggtgggtttctaggcaagttgat |
13878313 |
T |
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