View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12267_high_5 (Length: 300)

Name: NF12267_high_5
Description: NF12267
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12267_high_5
NF12267_high_5
[»] chr7 (1 HSPs)
chr7 (1-289)||(2300387-2300676)
[»] chr5 (1 HSPs)
chr5 (83-157)||(6562619-6562692)
[»] chr1 (1 HSPs)
chr1 (99-187)||(26761232-26761320)
[»] chr3 (4 HSPs)
chr3 (86-181)||(42461352-42461446)
chr3 (98-146)||(19790983-19791031)
chr3 (98-181)||(54457440-54457523)
chr3 (86-154)||(34600828-34600896)
[»] chr2 (2 HSPs)
chr2 (86-179)||(11074553-11074646)
chr2 (93-161)||(40142006-40142074)
[»] chr8 (2 HSPs)
chr8 (86-158)||(29912127-29912199)
chr8 (86-183)||(32615799-32615896)


Alignment Details
Target: chr7 (Bit Score: 250; Significance: 1e-139; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 1 - 289
Target Start/End: Original strand, 2300387 - 2300676
Alignment:
Q  1 atttaaataagggtatcgctaataagtgtcttaagttctcttagggcacttgttaagaagtcaaaaatagaatttagggcacttgtttt-ttatgttaca 99  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||| ||||||||||    
T  2300387 atttaaataagggtatcgctaataagtgccttaagttctcttagggcacttgttaaggagtcaaaaatagaattttgggcacttgtttttttatgttaca 2300486  T
Q  100 atgtgttgattaaacaaattttaagataaaattttcgctttaattttcttatcaagtgctctaaggacttttgttagcatttccatttaaataaacggaa 199  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  2300487 atgtgttgattaaacaaattttaagataaaattttcgctttaattttcttatcaagtgctctaaggacttttgttagcatttctatttaaataaacggaa 2300586  T
Q  200 gtgctcaaatacaaccacgcgtatttgtgtcgtaaggttttgaaaacgggtcccatatcgagaaaacagccccgtcataaagacacaggt 289  Q
    ||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||    
T  2300587 gtgctcaaatacaaccacgtgtatttgtgtcgcaaggttttgaaaacgggtcccatatcgagaaaacagccccgacataaagacataggt 2300676  T

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Target: chr5 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 83 - 157
Target Start/End: Complemental strand, 6562692 - 6562619
Alignment:
Q  83 ttgttttttatgttacaatgtgttgattaaacaaattttaagataaaattttcgctttaattttcttatcaagtg 157  Q
    |||||||| ||||| ||||||||||| || ||||||||||| ||||||||||  |||||| ||||||||||||||    
T  6562692 ttgtttttgatgtttcaatgtgttgaatacacaaattttaaaataaaatttttactttaa-tttcttatcaagtg 6562619  T

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Target: chr1 (Bit Score: 37; Significance: 0.000000000007; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 99 - 187
Target Start/End: Original strand, 26761232 - 26761320
Alignment:
Q  99 aatgtgttgattaaacaaattttaagataaaattttcgctttaattttcttatcaagtgctctaaggacttttgttagcatttccattt 187  Q
    |||||||||| || |||||||||||||||||||||||  |||||   ||||||||| ||| |||| | | |||||||||||||| ||||    
T  26761232 aatgtgttgaatacacaaattttaagataaaattttcattttaaacctcttatcaaatgccctaaaggcatttgttagcatttctattt 26761320  T

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Target: chr3 (Bit Score: 36; Significance: 0.00000000003; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 86 - 181
Target Start/End: Original strand, 42461352 - 42461446
Alignment:
Q  86 ttttttatgttacaatgtgttgattaaacaaattttaagataaaattttcgctttaattttcttatcaagtgctctaaggacttttgttagcattt 181  Q
    |||| |||||| ||||||||||| || |||||| |||||||||| ||||| ||||||  || |||||| ||| ||||| ||| |||||||||||||    
T  42461352 ttttatatgtttcaatgtgttgaatatacaaatcttaagataaatttttcactttaaactttttatcacgtgttctaa-gacatttgttagcattt 42461446  T

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Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 98 - 146
Target Start/End: Complemental strand, 19791031 - 19790983
Alignment:
Q  98 caatgtgttgattaaacaaattttaagataaaattttcgctttaatttt 146  Q
    |||||||||||||  |||||||||| |||||||||||| ||||||||||    
T  19791031 caatgtgttgattgcacaaattttatgataaaattttcactttaatttt 19790983  T

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Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 98 - 181
Target Start/End: Complemental strand, 54457523 - 54457440
Alignment:
Q  98 caatgtgttgattaaacaaattttaagataaaattttcgctttaattttcttatcaagtgctctaaggacttttgttagcattt 181  Q
    ||||||||||| || | ||||||||||||||| ||||   |||||| ||||||| ||||||||||||  |  ||||||||||||    
T  54457523 caatgtgttgaatacataaattttaagataaattttttattttaatcttcttattaagtgctctaagagcacttgttagcattt 54457440  T

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Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 86 - 154
Target Start/End: Original strand, 34600828 - 34600896
Alignment:
Q  86 ttttttatgttacaatgtgttgattaaacaaattttaagataaaattttcgctttaattttcttatcaa 154  Q
    ||||| |||||||||||||||||||| ||||||   || ||||||| || |||||||  ||||||||||    
T  34600828 tttttgatgttacaatgtgttgattacacaaatcccaaaataaaatatttgctttaaacttcttatcaa 34600896  T

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Target: chr2 (Bit Score: 34; Significance: 0.0000000004; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 86 - 179
Target Start/End: Original strand, 11074553 - 11074646
Alignment:
Q  86 ttttttatgttacaatgtgttgattaaacaaattttaagataaaattttcgctttaattttcttatcaagtgctctaaggacttttgttagcat 179  Q
    ||||||||||| ||||||||||| || ||||||   |||| |||||||   ||||||  ||||||||||||||||||||| |  ||||||||||    
T  11074553 ttttttatgtttcaatgtgttgaatacacaaatcccaagaaaaaatttctactttaaacttcttatcaagtgctctaagggcacttgttagcat 11074646  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 93 - 161
Target Start/End: Original strand, 40142006 - 40142074
Alignment:
Q  93 tgttacaatgtgttgattaaacaaattttaagataaaattttcgctttaattttcttatcaagtgctct 161  Q
    |||| ||||| ||||| || ||||||||||||||||| ||||  ||||||  |||||||||| ||||||    
T  40142006 tgtttcaatgagttgaatatacaaattttaagataaattttttactttaaacttcttatcaactgctct 40142074  T

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Target: chr8 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 86 - 158
Target Start/End: Complemental strand, 29912199 - 29912127
Alignment:
Q  86 ttttttatgttacaatgtgttgattaaacaaattttaagataaaattttcgctttaattttcttatcaagtgc 158  Q
    ||||| ||||| ||||| ||||| || |||||||||||||||||||||   ||||||  ||||||||||||||    
T  29912199 tttttgatgtttcaatgagttgaatacacaaattttaagataaaatttctactttaaacttcttatcaagtgc 29912127  T

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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 86 - 183
Target Start/End: Complemental strand, 32615896 - 32615799
Alignment:
Q  86 ttttttatgttacaatgtgttgattaaacaaattttaagataaaattttcgctttaattttcttatcaagtgctctaaggacttttgttagcatttcc 183  Q
    ||||| ||||| ||||||||||| || || ||||  ||||||||||||   ||||||  |||||||||||||| |||||| |  |||||| |||||||    
T  32615896 tttttaatgtttcaatgtgttgaatacacgaattccaagataaaatttctactttaaacttcttatcaagtgccctaagggcacttgttaacatttcc 32615799  T

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