View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12267_high_7 (Length: 249)
Name: NF12267_high_7
Description: NF12267
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12267_high_7 |
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Alignment Details
Target: chr6 (Bit Score: 212; Significance: 1e-116; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 11 - 230
Target Start/End: Original strand, 31091786 - 31092005
Alignment:
| Q |
11 |
gaacctgtgaataatgatttaaatctttcaatttaacacaatcctttgtttgaatttttgttttgtatcccattgttttgaaagataatatgtagctatg |
110 |
Q |
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| T |
31091786 |
gaacttgtgaataatgatttaaatctttcaatttaacacaatcctttgtttgaatttttgttttgtatcccattgttttgaaagataatatgtagctatg |
31091885 |
T |
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| Q |
111 |
atatgtgcaaatgttcttatatagagtttaaatcaaccgcttgatgcaaaaatcataatgcacgaaagaaggaataagcccaaaaacaaaaaggcgtgga |
210 |
Q |
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| T |
31091886 |
atatgtgcaaatgttcttatatagagtttaaatcaaccacttgatgcaaaaatcataatgcacgaaagaaggaataagcccaaaaacaaaaaggcgtgga |
31091985 |
T |
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| Q |
211 |
aaaagaattactaaaattac |
230 |
Q |
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| T |
31091986 |
aaaagaattactaaaattac |
31092005 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 102; E-Value: 9e-51
Query Start/End: Original strand, 11 - 190
Target Start/End: Complemental strand, 31040182 - 31039984
Alignment:
| Q |
11 |
gaacctgtgaataatgatttaaatctttcaatttaacacaatcctttgtttgaatttttgttttgtatcccatt-----gttttgaaagataatatgtag |
105 |
Q |
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| T |
31040182 |
gaacttgtgaataatgatttaaatctttcaatttaacacaatcctttatttgaatttt-gttttgtatcccattatattgttttgaaagataatatgtag |
31040084 |
T |
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| Q |
106 |
---------------ctatgatatgtgcaaatgttcttatatagagtttaaatcaaccgcttgatgcaaaaatcataatgcacgaaagaaggaataagcc |
190 |
Q |
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| T |
31040083 |
ttgttgtacatgtagctatgatatgtgcaaatgttcttatatagagtttaaatcaaccacttgatgcaaaaatcataatacacgaaagaaggattaagcc |
31039984 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 27 - 92
Target Start/End: Complemental strand, 31075786 - 31075722
Alignment:
| Q |
27 |
atttaaatctttcaatttaacacaatcctttgtttgaatttttgttttgtatcccattgttttgaa |
92 |
Q |
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||||| ||||||||| |||||||||||||| ||||||| ||||||||||||||||||||||||||| |
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| T |
31075786 |
atttagatctttcaagttaacacaatccttagtttgaa-ttttgttttgtatcccattgttttgaa |
31075722 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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