View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12267_low_3 (Length: 552)
Name: NF12267_low_3
Description: NF12267
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12267_low_3 |
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| [»] scaffold0001 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 340; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 340; E-Value: 0
Query Start/End: Original strand, 62 - 535
Target Start/End: Complemental strand, 8986328 - 8985850
Alignment:
| Q |
62 |
ttgtagaaaaagatccctgcaaaatattttgtttgtctttccacaaactcgacactaaagtttagataataatggataaagagagttctacgtttttgca |
161 |
Q |
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| T |
8986328 |
ttgtagaaaaagattc-tgcaaaatattttgtttgtctcccaacaaactcgacactggagtttacataatactggctaaagagagttctacgtttttgca |
8986230 |
T |
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| Q |
162 |
ttatatatccaagttcaataatgttagtctttattgagaaaaaattatcgaccactctctttgcatctatcctaaaatctatgggtcccaaatgtaactc |
261 |
Q |
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| T |
8986229 |
ttatacatccaagttcagtaatgttaatctttattgagaaaaaattatcgaccactctctttgcatccgtcctaaaatctatgggtcccaaatgtaactc |
8986130 |
T |
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| Q |
262 |
atggagccattctaaagctgagagagaccaagagcttcatctatatatgaacatcacagattggactaaaccattatgttctagccaaaacaaaagttca |
361 |
Q |
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| T |
8986129 |
atggagccattctaatgctgagagagaccaagagcttcatctatatatgaacatcacaaattgaactaaaccattatgttctagccaaagcaaaagttta |
8986030 |
T |
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| Q |
362 |
tgtataatc-tggaatgcacataccgatcccaacttttttatcctctttggaaaaagatgcatctacattacatttaaatatcccttattgtggcttcaa |
460 |
Q |
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| T |
8986029 |
tgtataatcttggaatgcacataccgatcccaactttgttatcctctttgaaaaaggatgcatctacattacatttaaatatcatttgttgtggcttcaa |
8985930 |
T |
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| Q |
461 |
ccgttttgcccttccaacatgtattataggtgcattcactgaatt-----ccatttgagttgccaaccattggtcaagca |
535 |
Q |
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| T |
8985929 |
ccgttttgcccttccaacatgtattataggtgcattcactgaattgtgtaccatttgagttgccaaccactggtcaagca |
8985850 |
T |
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Target: chr5 (Bit Score: 34; Significance: 0.0000000008; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 62 - 95
Target Start/End: Complemental strand, 22551251 - 22551218
Alignment:
| Q |
62 |
ttgtagaaaaagatccctgcaaaatattttgttt |
95 |
Q |
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| T |
22551251 |
ttgtagaaaaagatccctgcaaaatattttgttt |
22551218 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 90 - 158
Target Start/End: Complemental strand, 9376226 - 9376158
Alignment:
| Q |
90 |
ttgtttgtctttccacaaactcgacactaaagtttagataataatggataaagagagttctacgttttt |
158 |
Q |
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| T |
9376226 |
ttgtttgtctttgcacaaactctacactcaagttttcataatattaactaaagagagttctacgttttt |
9376158 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 19 - 95
Target Start/End: Original strand, 37952691 - 37952766
Alignment:
| Q |
19 |
ctgtaaatatgccttgctttggttttagtccctgtnnnnnnnnttgtagaaaaagatccctgcaaaatattttgttt |
95 |
Q |
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| T |
37952691 |
ctgtaaatatgtcttattttggttttagtccctgtaaaaaaa-ttgtagaaaaaggtccctgcaaaatattttgttt |
37952766 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0001 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: scaffold0001
Description:
Target: scaffold0001; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 67 - 95
Target Start/End: Original strand, 148092 - 148120
Alignment:
| Q |
67 |
gaaaaagatccctgcaaaatattttgttt |
95 |
Q |
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| T |
148092 |
gaaaaagatccctgcaaaatattttgttt |
148120 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 67 - 95
Target Start/End: Complemental strand, 9596890 - 9596862
Alignment:
| Q |
67 |
gaaaaagatccctgcaaaatattttgttt |
95 |
Q |
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| T |
9596890 |
gaaaaagatccctgcaaaatattttgttt |
9596862 |
T |
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