View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12267_low_4 (Length: 496)
Name: NF12267_low_4
Description: NF12267
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12267_low_4 |
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| [»] scaffold0474 (1 HSPs) |
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Alignment Details
Target: scaffold0474 (Bit Score: 400; Significance: 0; HSPs: 1)
Name: scaffold0474
Description:
Target: scaffold0474; HSP #1
Raw Score: 400; E-Value: 0
Query Start/End: Original strand, 13 - 480
Target Start/End: Original strand, 9397 - 9864
Alignment:
| Q |
13 |
ctgtgcaatgaagtgttgtcgacagctaatgatagagacttaagagatgaaagtacatccaaacaaatagcattatccatcataaaactatcatgagagt |
112 |
Q |
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| T |
9397 |
ctgtgcaatgaagtgttgtcgacagctaatgatagagacttaagagatgaaagtccatccaaacaaatagcattatccatcataaaactatcatgagagt |
9496 |
T |
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| Q |
113 |
ataagacttctagatttatcaactctgcaataataatatgtaaataaaaatgatagttactatgacaaaatagattcactttttactttagtaactgaga |
212 |
Q |
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| T |
9497 |
gtaagacttccagatttttcaaccctgcaataataatatgtaaataaaaatgatagttactataacaaaatagattcactttttactttagtaattgcga |
9596 |
T |
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| Q |
213 |
aataaccttgaccagttcttgtacaattggatattcgagtaagatacaggctgagagttttcaaatctttgaagattatcaaatccgagtagttaacttg |
312 |
Q |
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| T |
9597 |
aataaccttgaccagttcttgtacaattggatatttgagtaagatacaggctgagaaatttcaactctttgaaggatatcaaatccgagtagttaacttg |
9696 |
T |
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| Q |
313 |
ccaagttcgtccatcaatggattcaagttcgagttcggacactcttcctgtggtggtgttgcattcgactccataccattgacaacaatcattggtgttt |
412 |
Q |
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| T |
9697 |
ccaagttcgtccatccatggattcaagttcgagttcggacactcttcctgtggtggtgttgcattcgactccataccattgacaacaatcattggtgttt |
9796 |
T |
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| Q |
413 |
ccccaagacagataattacccatttgggaattcagagcaataagagcttctctttcttgcttccaaca |
480 |
Q |
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| T |
9797 |
ccccaagacagatagttgcccatttgggaattcagagcaataagagcttctctttcttgcttccaaca |
9864 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 119 - 247
Target Start/End: Original strand, 24249074 - 24249202
Alignment:
| Q |
119 |
cttctagatttatcaactctgca--ataata-atatgtaaataaaaatgatagttactatgacaaaat-agattcactttttactttagtaactgagaaa |
214 |
Q |
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| T |
24249074 |
cttcaagatttttcaaccctgcataataatatatatgtaaatgaaaattatggttactatgtcaaaattagattaactttt-acttt-gta--tgagaaa |
24249169 |
T |
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| Q |
215 |
taaccttgaccagttcttgtacaattggatatt |
247 |
Q |
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| T |
24249170 |
taaccttgatgagttcttgtacaattggatatt |
24249202 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 212 - 248
Target Start/End: Original strand, 24266997 - 24267033
Alignment:
| Q |
212 |
aaataaccttgaccagttcttgtacaattggatattc |
248 |
Q |
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| T |
24266997 |
aaataaccttgatcagttcttgtacaattggatattc |
24267033 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 35 - 78
Target Start/End: Original strand, 24248981 - 24249024
Alignment:
| Q |
35 |
cagctaatgatagagacttaagagatgaaagtacatccaaacaa |
78 |
Q |
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| T |
24248981 |
cagctaatgatagagacttaagagaagaaagtccgtccaaacaa |
24249024 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 445 - 480
Target Start/End: Original strand, 24267203 - 24267238
Alignment:
| Q |
445 |
cagagcaataagagcttctctttcttgcttccaaca |
480 |
Q |
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| T |
24267203 |
cagagcaataagagcttctctctcttgcttccaaca |
24267238 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 436 - 480
Target Start/End: Complemental strand, 41908847 - 41908803
Alignment:
| Q |
436 |
ttgggaattcagagcaataagagcttctctttcttgcttccaaca |
480 |
Q |
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| T |
41908847 |
ttgggtattgagagcaataagcgcttctctctcttgcttccaaca |
41908803 |
T |
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