View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12267_low_5 (Length: 475)

Name: NF12267_low_5
Description: NF12267
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12267_low_5
NF12267_low_5
[»] chr3 (6 HSPs)
chr3 (15-456)||(7948581-7949022)
chr3 (393-446)||(41319316-41319368)
chr3 (398-456)||(27513658-27513716)
chr3 (393-447)||(13799505-13799558)
chr3 (390-435)||(34409359-34409403)
chr3 (391-435)||(12704674-12704717)
[»] chr5 (7 HSPs)
chr5 (384-444)||(38749571-38749630)
chr5 (393-448)||(38866454-38866510)
chr5 (392-432)||(4014795-4014835)
chr5 (384-435)||(43208291-43208341)
chr5 (395-435)||(11596472-11596511)
chr5 (393-433)||(28296329-28296368)
chr5 (393-445)||(32630742-32630793)
[»] chr2 (6 HSPs)
chr2 (390-445)||(18570970-18571024)
chr2 (408-459)||(28341862-28341913)
chr2 (383-435)||(7803433-7803484)
chr2 (393-437)||(40681983-40682026)
chr2 (412-456)||(12668419-12668463)
chr2 (393-445)||(37402091-37402143)
[»] chr7 (6 HSPs)
chr7 (393-447)||(38134411-38134464)
chr7 (393-450)||(1334899-1334956)
chr7 (398-435)||(36013815-36013852)
chr7 (393-456)||(32308121-32308183)
chr7 (413-446)||(19930947-19930980)
chr7 (406-434)||(32115414-32115442)
[»] chr6 (2 HSPs)
chr6 (391-448)||(30866148-30866204)
chr6 (395-453)||(9617437-9617494)
[»] chr1 (5 HSPs)
chr1 (391-456)||(6427349-6427413)
chr1 (390-456)||(26777373-26777439)
chr1 (390-435)||(24176817-24176862)
chr1 (384-452)||(19637760-19637827)
chr1 (393-445)||(40747780-40747831)
[»] scaffold0022 (1 HSPs)
scaffold0022 (384-456)||(99885-99956)
[»] chr4 (6 HSPs)
chr4 (393-445)||(18513248-18513299)
chr4 (393-448)||(14465298-14465352)
chr4 (381-436)||(44796978-44797032)
chr4 (381-435)||(5654608-5654661)
chr4 (393-445)||(35723391-35723443)
chr4 (384-447)||(56049869-56049930)
[»] scaffold0004 (1 HSPs)
scaffold0004 (390-445)||(100997-101052)
[»] chr8 (2 HSPs)
chr8 (393-452)||(10002163-10002222)
chr8 (410-446)||(14229557-14229593)


Alignment Details
Target: chr3 (Bit Score: 422; Significance: 0; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 422; E-Value: 0
Query Start/End: Original strand, 15 - 456
Target Start/End: Original strand, 7948581 - 7949022
Alignment:
Q  15 tgctttgatctgtgttgttggtggttctgctggttttgctggttcaagttttgtatccaacttgcagaaaataaaataaatttgatttctctcttatggt 114  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7948581 tgctttgatctgtgttgttggtggttctgctggttttgctggttcaagttttgtatccaacttgcagaaaataaaataaatttgatttctctcttatggt 7948680  T
Q  115 ttttatattagtcctttgttatcttattgtattatgatgtgaagagtgaagaaataatgaatgaattcattaattgatttgtgaatgattcaaagattta 214  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  7948681 ttttatattagtcctttgttatcttattgtattatgatgtgaaaagtgaagaaataatgaatgaattcattgattgatttgtgaatgattcaaagattta 7948780  T
Q  215 tatatggaaatggaacaaacagaaaatgtaactaaataaacagaattaactgattctgttattagatttaacatttttgtgttctctataagaactgttt 314  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||    
T  7948781 tatatggaaatggaacaaacagaaaatgtaactaaataaacagaattaactgattctgttattagatttaacatttttatgttctctataagaattgttt 7948880  T
Q  315 cacttgtgtggtgttgttatgaattacaacctatgaaacaatgactcggatatggacatgaaacggacagacatatcaacaccgataatagtttgagaaa 414  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7948881 cacttgtgtggtgttgttatgaattacaacctatgaaacaatgactcggatatggacatgaaacggacagacatatcaacaccgataatagtttgagaaa 7948980  T
Q  415 aatgacataattcaatgtaattgtatgtgtcggagtcgtgtc 456  Q
    ||||||||||||||||||||||||||||||| ||||||||||    
T  7948981 aatgacataattcaatgtaattgtatgtgtcagagtcgtgtc 7949022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 393 - 446
Target Start/End: Complemental strand, 41319368 - 41319316
Alignment:
Q  393 acaccgataatagtttgagaaaaatgacataattcaatgtaattgtatgtgtcg 446  Q
    ||||| |||||| ||||| |||||||||||||||||||||||||||||||||||    
T  41319368 acaccaataataatttga-aaaaatgacataattcaatgtaattgtatgtgtcg 41319316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 398 - 456
Target Start/End: Complemental strand, 27513716 - 27513658
Alignment:
Q  398 gataatagtttgagaaaaatgacataattcaatgtaattgtatgtgtcggagtcgtgtc 456  Q
    ||||||| ||||||||||||||||| ||||||||||||  |||||||||| ||| ||||    
T  27513716 gataataatttgagaaaaatgacattattcaatgtaatcatatgtgtcggtgtcttgtc 27513658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 393 - 447
Target Start/End: Original strand, 13799505 - 13799558
Alignment:
Q  393 acaccgataatagtttgagaaaaatgacataattcaatgtaattgtatgtgtcgg 447  Q
    ||||||||||||||||||| |||||||||||||| | ||||||  ||||||||||    
T  13799505 acaccgataatagtttgag-aaaatgacataattaagtgtaataatatgtgtcgg 13799558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 390 - 435
Target Start/End: Complemental strand, 34409403 - 34409359
Alignment:
Q  390 tcaacaccgataatagtttgagaaaaatgacataattcaatgtaat 435  Q
    ||||||||||||||| || ||||||| |||||||||||||||||||    
T  34409403 tcaacaccgataatacttcgagaaaa-tgacataattcaatgtaat 34409359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 391 - 435
Target Start/End: Complemental strand, 12704717 - 12704674
Alignment:
Q  391 caacaccgataatagtttgagaaaaatgacataattcaatgtaat 435  Q
    |||||| ||||||| ||||| ||||||||||||||||||||||||    
T  12704717 caacacggataataatttga-aaaaatgacataattcaatgtaat 12704674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 37; Significance: 0.00000000001; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 384 - 444
Target Start/End: Complemental strand, 38749630 - 38749571
Alignment:
Q  384 gacatatcaacaccgataatagtttgagaaaaatgacataattcaatgtaattgtatgtgt 444  Q
    ||||| || |||||||||||| ||||| ||||||||||||||||||||||||| |||||||    
T  38749630 gacatgtcgacaccgataataatttga-aaaaatgacataattcaatgtaattatatgtgt 38749571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 393 - 448
Target Start/End: Original strand, 38866454 - 38866510
Alignment:
Q  393 acaccgataatagtttgagaaaaatgacataattcaatgtaa-ttgtatgtgtcgga 448  Q
    |||||||||||| ||||| ||||||||||||||||||||||| || |||||||||||    
T  38866454 acaccgataatattttgaaaaaaatgacataattcaatgtaatttatatgtgtcgga 38866510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 392 - 432
Target Start/End: Complemental strand, 4014835 - 4014795
Alignment:
Q  392 aacaccgataatagtttgagaaaaatgacataattcaatgt 432  Q
    ||||||||||||  |||||||||||||||||||||||||||    
T  4014835 aacaccgataatgatttgagaaaaatgacataattcaatgt 4014795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 384 - 435
Target Start/End: Complemental strand, 43208341 - 43208291
Alignment:
Q  384 gacatatcaacaccgataatagtttgagaaaaatgacataattcaatgtaat 435  Q
    |||| ||||||||||||| || |||||||||| |||||||||||||||||||    
T  43208341 gacacatcaacaccgatagtaatttgagaaaa-tgacataattcaatgtaat 43208291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 395 - 435
Target Start/End: Complemental strand, 11596511 - 11596472
Alignment:
Q  395 accgataatagtttgagaaaaatgacataattcaatgtaat 435  Q
    |||||||||| |||||||||| |||||||||||||||||||    
T  11596511 accgataataatttgagaaaa-tgacataattcaatgtaat 11596472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 393 - 433
Target Start/End: Original strand, 28296329 - 28296368
Alignment:
Q  393 acaccgataatagtttgagaaaaatgacataattcaatgta 433  Q
    |||||||||||| |||||||||| |||||||||||||||||    
T  28296329 acaccgataataatttgagaaaa-tgacataattcaatgta 28296368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 393 - 445
Target Start/End: Complemental strand, 32630793 - 32630742
Alignment:
Q  393 acaccgataatagtttgagaaaaatgacataattcaatgtaattgtatgtgtc 445  Q
    |||||||||||| |||||||||| | | |||||||||||||||| ||||||||    
T  32630793 acaccgataataatttgagaaaatt-atataattcaatgtaattatatgtgtc 32630742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 36; Significance: 0.00000000004; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 390 - 445
Target Start/End: Original strand, 18570970 - 18571024
Alignment:
Q  390 tcaacaccgataatagtttgagaaaaatgacataattcaatgtaattgtatgtgtc 445  Q
    ||||||||||||||| |||||||||| |||||||||||||||||||  ||||||||    
T  18570970 tcaacaccgataataatttgagaaaa-tgacataattcaatgtaatcatatgtgtc 18571024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 408 - 459
Target Start/End: Complemental strand, 28341913 - 28341862
Alignment:
Q  408 tgagaaaaatgacataattcaatgtaattgtatgtgtcggagtcgtgtctga 459  Q
    ||||||||||||||||||||||||||||| ||  |||||| |||||||||||    
T  28341913 tgagaaaaatgacataattcaatgtaattatagatgtcggtgtcgtgtctga 28341862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 383 - 435
Target Start/End: Complemental strand, 7803484 - 7803433
Alignment:
Q  383 agacatatcaacaccgataatagtttgagaaaaatgacataattcaatgtaat 435  Q
    ||||||| |||||||||||||||||||| ||| ||||||||||||||| ||||    
T  7803484 agacataccaacaccgataatagtttga-aaagatgacataattcaatataat 7803433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 393 - 437
Target Start/End: Original strand, 40681983 - 40682026
Alignment:
Q  393 acaccgataatagtttgagaaaaatgacataattcaatgtaattg 437  Q
    |||||||||||| |||||||||| |||||||||||||||||||||    
T  40681983 acaccgataataatttgagaaaa-tgacataattcaatgtaattg 40682026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 412 - 456
Target Start/End: Complemental strand, 12668463 - 12668419
Alignment:
Q  412 aaaaatgacataattcaatgtaattgtatgtgtcggagtcgtgtc 456  Q
    ||||||||||||||||| ||||||| || ||||||| ||||||||    
T  12668463 aaaaatgacataattcagtgtaattataagtgtcggtgtcgtgtc 12668419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 393 - 445
Target Start/End: Complemental strand, 37402143 - 37402091
Alignment:
Q  393 acaccgataatagtttgagaaaaatgacataattcaatgtaattgtatgtgtc 445  Q
    |||||||| ||| ||| | ||||||||||||||||||||||||  ||||||||    
T  37402143 acaccgattataatttaaaaaaaatgacataattcaatgtaatcatatgtgtc 37402091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 35; Significance: 0.0000000002; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 393 - 447
Target Start/End: Complemental strand, 38134464 - 38134411
Alignment:
Q  393 acaccgataatagtttgagaaaaatgacataattcaatgtaattgtatgtgtcgg 447  Q
    |||||||||||| |||||||||| |||||||||||||||||||  ||||||||||    
T  38134464 acaccgataataatttgagaaaa-tgacataattcaatgtaatcatatgtgtcgg 38134411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 393 - 450
Target Start/End: Complemental strand, 1334956 - 1334899
Alignment:
Q  393 acaccgataatagtttgagaaaaatgacataattcaatgtaattgtatgtgtcggagt 450  Q
    ||||| |||||| ||||| |||||||||||||||||||||| || ||||||| |||||    
T  1334956 acaccaataataatttgaaaaaaatgacataattcaatgtatttatatgtgttggagt 1334899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 398 - 435
Target Start/End: Complemental strand, 36013852 - 36013815
Alignment:
Q  398 gataatagtttgagaaaaatgacataattcaatgtaat 435  Q
    ||||||| ||||||||||||||||||||||||||||||    
T  36013852 gataataatttgagaaaaatgacataattcaatgtaat 36013815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 393 - 456
Target Start/End: Original strand, 32308121 - 32308183
Alignment:
Q  393 acaccgataatagtttgagaaaaatgacataattcaatgtaattgtatgtgtcggagtcgtgtc 456  Q
    |||||| ||||| |||||||||| | |||||||||| |||||||||||||||| | ||||||||    
T  32308121 acaccgctaataatttgagaaaa-tcacataattcagtgtaattgtatgtgtcagtgtcgtgtc 32308183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 413 - 446
Target Start/End: Complemental strand, 19930980 - 19930947
Alignment:
Q  413 aaaatgacataattcaatgtaattgtatgtgtcg 446  Q
    |||||||||||||||||||||||| |||||||||    
T  19930980 aaaatgacataattcaatgtaattatatgtgtcg 19930947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 406 - 434
Target Start/End: Complemental strand, 32115442 - 32115414
Alignment:
Q  406 tttgagaaaaatgacataattcaatgtaa 434  Q
    |||||||||||||||||||||||||||||    
T  32115442 tttgagaaaaatgacataattcaatgtaa 32115414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 34; Significance: 0.0000000007; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 391 - 448
Target Start/End: Complemental strand, 30866204 - 30866148
Alignment:
Q  391 caacaccgataatagtttgagaaaaatgacataattcaatgtaattgtatgtgtcgga 448  Q
    |||||||| ||||| |||||||||| | |||||||||||||||||| |||||||||||    
T  30866204 caacaccgctaataatttgagaaaa-tcacataattcaatgtaattatatgtgtcgga 30866148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 395 - 453
Target Start/End: Original strand, 9617437 - 9617494
Alignment:
Q  395 accgataatagtttgagaaaaatgacataattcaatgtaattgtatgtgtcggagtcgt 453  Q
    |||| ||||| |||||||||| | |||||||||||||||||| |||||||||| |||||    
T  9617437 accggtaataatttgagaaaa-tcacataattcaatgtaattatatgtgtcggtgtcgt 9617494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 34; Significance: 0.0000000007; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 391 - 456
Target Start/End: Original strand, 6427349 - 6427413
Alignment:
Q  391 caacaccgataatagtttgagaaaaatgacataattcaatgtaattgtatgtgtcggagtcgtgtc 456  Q
    |||||||| ||||| |||||||||| | |||||||||||||||||| ||||||| || ||||||||    
T  6427349 caacaccgctaataatttgagaaaa-tcacataattcaatgtaattatatgtgttggtgtcgtgtc 6427413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 390 - 456
Target Start/End: Complemental strand, 26777439 - 26777373
Alignment:
Q  390 tcaacaccgataatagtttgagaaaaatgacataattcaatgtaattgtatgtgtcggagtcgtgtc 456  Q
    ||||||||||||||| ||||| ||||||||| ||||| ||||||||   |||||| || ||||||||    
T  26777439 tcaacaccgataataatttgaaaaaaatgacttaattgaatgtaatcacatgtgtgggtgtcgtgtc 26777373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 390 - 435
Target Start/End: Original strand, 24176817 - 24176862
Alignment:
Q  390 tcaacaccgataatagtttgagaaaaatgacataattcaatgtaat 435  Q
    ||||||||||||| | ||||||||||||||||| ||| ||||||||    
T  24176817 tcaacaccgataaaattttgagaaaaatgacatgatttaatgtaat 24176862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 384 - 452
Target Start/End: Original strand, 19637760 - 19637827
Alignment:
Q  384 gacatatcaacaccgataatagtttgagaaaaatgacataattcaatgtaattgtatgtgtcggagtcg 452  Q
    |||| ||| |||||||||||| ||| |||||| |||||| ||||||||||||  |||||||||| ||||    
T  19637760 gacacatcgacaccgataataatttaagaaaa-tgacattattcaatgtaatcatatgtgtcggtgtcg 19637827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 393 - 445
Target Start/End: Complemental strand, 40747831 - 40747780
Alignment:
Q  393 acaccgataatagtttgagaaaaatgacataattcaatgtaattgtatgtgtc 445  Q
    |||| ||||||| |||||||||| |||||||||||||||||||| || |||||    
T  40747831 acacggataataatttgagaaaa-tgacataattcaatgtaattataggtgtc 40747780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0022 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: scaffold0022
Description:

Target: scaffold0022; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 384 - 456
Target Start/End: Original strand, 99885 - 99956
Alignment:
Q  384 gacatatcaacaccgataatagtttgagaaaaatgacataattcaatgtaattgtatgtgtcggagtcgtgtc 456  Q
    ||||| || |||||||||||| ||| |||||| | |||||||||||||||||| ||||||| || ||||||||    
T  99885 gacatgtcgacaccgataataattttagaaaa-taacataattcaatgtaattatatgtgttggtgtcgtgtc 99956  T

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Target: chr4 (Bit Score: 33; Significance: 0.000000003; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 393 - 445
Target Start/End: Complemental strand, 18513299 - 18513248
Alignment:
Q  393 acaccgataatagtttgagaaaaatgacataattcaatgtaattgtatgtgtc 445  Q
    |||||||||||| |||||||||| |||||||||||||||||||  ||||||||    
T  18513299 acaccgataataatttgagaaaa-tgacataattcaatgtaatcatatgtgtc 18513248  T

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Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 393 - 448
Target Start/End: Complemental strand, 14465352 - 14465298
Alignment:
Q  393 acaccgataatagtttgagaaaaatgacataattcaatgtaattgtatgtgtcgga 448  Q
    |||||||||||| |||||||||| |||||||||||||| ||||  |||||||||||    
T  14465352 acaccgataataatttgagaaaa-tgacataattcaatttaatcatatgtgtcgga 14465298  T

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Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 381 - 436
Target Start/End: Complemental strand, 44797032 - 44796978
Alignment:
Q  381 acagacatatcaacaccgataatagtttgagaaaaatgacataattcaatgtaatt 436  Q
    |||||||| |||||||||| |||| |||||||||| | ||||||||||||||||||    
T  44797032 acagacatgtcaacaccgacaataatttgagaaaa-taacataattcaatgtaatt 44796978  T

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Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 381 - 435
Target Start/End: Complemental strand, 5654661 - 5654608
Alignment:
Q  381 acagacatatcaacaccgataatagtttgagaaaaatgacataattcaatgtaat 435  Q
    |||||||| || |||| ||||||| |||||||||| |||||||||||||||||||    
T  5654661 acagacatgtcgacactgataataatttgagaaaa-tgacataattcaatgtaat 5654608  T

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Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 393 - 445
Target Start/End: Complemental strand, 35723443 - 35723391
Alignment:
Q  393 acaccgataatagtttgagaaaaatgacataattcaatgtaattgtatgtgtc 445  Q
    |||||| ||||| ||||||||||   |||||||||||||||||| ||||||||    
T  35723443 acaccgctaataatttgagaaaatacacataattcaatgtaattatatgtgtc 35723391  T

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Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 384 - 447
Target Start/End: Original strand, 56049869 - 56049930
Alignment:
Q  384 gacatatcaacaccgataatagtttgagaaaaatgacataattcaatgtaattgtatgtgtcgg 447  Q
    |||| ||| |||||||||||| |||||||||  ||||||| |||||||||||  ||||||||||    
T  56049869 gacacatcgacaccgataataatttgagaaa--tgacatagttcaatgtaatcatatgtgtcgg 56049930  T

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Target: scaffold0004 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0004
Description:

Target: scaffold0004; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 390 - 445
Target Start/End: Original strand, 100997 - 101052
Alignment:
Q  390 tcaacaccgataatagtttgagaaaaatgacataattcaatgtaattgtatgtgtc 445  Q
    ||||||||||| ||| |||   ||||||||||||||||||||||||| ||||||||    
T  100997 tcaacaccgatgatattttttaaaaaatgacataattcaatgtaattatatgtgtc 101052  T

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Target: chr8 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 393 - 452
Target Start/End: Complemental strand, 10002222 - 10002163
Alignment:
Q  393 acaccgataatagtttgagaaaaatgacataattcaatgtaattgtatgtgtcggagtcg 452  Q
    |||||||||||| ||||| ||||||||||||||| ||||||||   ||||||||| ||||    
T  10002222 acaccgataataatttgaaaaaaatgacataatttaatgtaatcacatgtgtcggtgtcg 10002163  T

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Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 410 - 446
Target Start/End: Original strand, 14229557 - 14229593
Alignment:
Q  410 agaaaaatgacataattcaatgtaattgtatgtgtcg 446  Q
    |||||||||||||||||||||||||| | ||||||||    
T  14229557 agaaaaatgacataattcaatgtaatcgcatgtgtcg 14229593  T

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