View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12268_high_11 (Length: 299)
Name: NF12268_high_11
Description: NF12268
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12268_high_11 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 146; Significance: 6e-77; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 146; E-Value: 6e-77
Query Start/End: Original strand, 1 - 150
Target Start/End: Original strand, 9352170 - 9352319
Alignment:
| Q |
1 |
aattgcacccattcttcgtgttgctaatgaagttgaaaagactcatcctagagttgcttatttatgtaagtgtttcttcaacttctattctcttccgttt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
9352170 |
aattgcacccattcttcgtgttgctaatgaagttgaaaagactcatcctagagttgcttatttatgtaagtgtttcttcaacttctattctcttccattt |
9352269 |
T |
|
| Q |
101 |
tcattgttacaatgacagattatagagtaactcaccaggtcaacattgaa |
150 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9352270 |
tcattgttacaatgacagattatagagtaactcaccaggtcaacattgaa |
9352319 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 104; E-Value: 7e-52
Query Start/End: Original strand, 186 - 289
Target Start/End: Original strand, 9352319 - 9352422
Alignment:
| Q |
186 |
attgatgaattactcataggtcatgttatgctatgttttgtttggtgatttcgattttattgtattgtaggtcgcttttatgcttttgagaaagctcaca |
285 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9352319 |
attgatgaattactcataggtcatgttatgctatgttttgtttggtgatttcgattttattgtattgtaggtcgcttttatgcttttgagaaagctcaca |
9352418 |
T |
|
| Q |
286 |
ggtt |
289 |
Q |
| |
|
|||| |
|
|
| T |
9352419 |
ggtt |
9352422 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 1 - 73
Target Start/End: Original strand, 650173 - 650245
Alignment:
| Q |
1 |
aattgcacccattcttcgtgttgctaatgaagttgaaaagactcatcctagagttgcttatttatgtaagtgt |
73 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
650173 |
aattgcacccattctttgtgttgctaatgaagttgaaaagactcatcctaaagttgcttatttatgtaagtgt |
650245 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 1 - 72
Target Start/End: Complemental strand, 426736 - 426665
Alignment:
| Q |
1 |
aattgcacccattcttcgtgttgctaatgaagttgaaaagactcatcctagagttgcttatttatgtaagtg |
72 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
426736 |
aattgctcccattcttcgtgttgctaatgaagttgaaaaaactcatcctagagttgcttatttatgtaagtg |
426665 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 219 - 283
Target Start/End: Original strand, 650303 - 650367
Alignment:
| Q |
219 |
tgttttgtttggtgatttcgattttattgtattgtaggtcgcttttatgcttttgagaaagctca |
283 |
Q |
| |
|
|||| ||||||||||| ||||| |||||| ||||||||| ||||||| || |||||||||||||| |
|
|
| T |
650303 |
tgttgtgtttggtgatctcgatattattgcattgtaggtggcttttacgcctttgagaaagctca |
650367 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 250 - 289
Target Start/End: Complemental strand, 426594 - 426555
Alignment:
| Q |
250 |
ttgtaggtcgcttttatgcttttgagaaagctcacaggtt |
289 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||| ||||| |
|
|
| T |
426594 |
ttgtaggtcgattttatgcttttgagaaagctcataggtt |
426555 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 56; Significance: 3e-23; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 1 - 76
Target Start/End: Original strand, 52596083 - 52596158
Alignment:
| Q |
1 |
aattgcacccattcttcgtgttgctaatgaagttgaaaagactcatcctagagttgcttatttatgtaagtgtttc |
76 |
Q |
| |
|
|||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||| | ||||||| |||| |
|
|
| T |
52596083 |
aattgctcccattcttcgtgttgctaatgaggttgaaaagactcatcctagagttgcttatctctgtaagtatttc |
52596158 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 248 - 289
Target Start/End: Original strand, 52596578 - 52596619
Alignment:
| Q |
248 |
tattgtaggtcgcttttatgcttttgagaaagctcacaggtt |
289 |
Q |
| |
|
||||||||| || ||||||||||||||||||||||| ||||| |
|
|
| T |
52596578 |
tattgtaggccggttttatgcttttgagaaagctcataggtt |
52596619 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University