View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12268_high_14 (Length: 261)
Name: NF12268_high_14
Description: NF12268
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12268_high_14 |
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| [»] scaffold0001 (2 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 160; Significance: 2e-85; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 160; E-Value: 2e-85
Query Start/End: Original strand, 12 - 179
Target Start/End: Original strand, 52185119 - 52185286
Alignment:
| Q |
12 |
agagaaggtgaacaaggaattttttgagccatataacatgaagccaaagaatagtaaagagatgatgatgatgtcgtcccaggaagagacaactcagatg |
111 |
Q |
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| T |
52185119 |
agagaaggtgaacaaggaattttttgagccatataacatgaagccaaagaatagtaaagagatgatgatgatgatgtcccaggaagagacaactcagatg |
52185218 |
T |
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| Q |
112 |
ttacagaagatgatctcagcttcggattcctctaaaggtgtcccataatcaatcaactcttgaaaatt |
179 |
Q |
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| T |
52185219 |
ttacagaagatgatctcagcttcggattcctctaaaggtgtcccataatcaatcaactcttgaaaatt |
52185286 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 174 - 245
Target Start/End: Original strand, 52185332 - 52185403
Alignment:
| Q |
174 |
aaaattcagagaaaggatcgtccctactttattattatcaaaacctagtgctagtagtctatgcgcaattat |
245 |
Q |
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| T |
52185332 |
aaaattcagagaaaggatcgtccctactttattattatcaaaacctagtgctagtagtctatgcgcaattat |
52185403 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0001 (Bit Score: 93; Significance: 2e-45; HSPs: 2)
Name: scaffold0001
Description:
Target: scaffold0001; HSP #1
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 12 - 151
Target Start/End: Original strand, 66756 - 66889
Alignment:
| Q |
12 |
agagaaggtgaacaaggaattttttgagccatataacatgaagccaaagaatagtaaagagatgatgatgatgtcgtcccaggaagagacaactcagatg |
111 |
Q |
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| T |
66756 |
agagaaggtgaacaaggaattttttgaggcatataagatgaagccaaagaataatgaagagataatgatg------tcccaggaagagacaactcggatg |
66849 |
T |
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| Q |
112 |
ttacagaagatgatctcagcttcggattcctctaaaggtg |
151 |
Q |
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| T |
66850 |
ttacagaagatgatctcagcttcggattcctctaaaggtg |
66889 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0001; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 174 - 245
Target Start/End: Original strand, 66947 - 67020
Alignment:
| Q |
174 |
aaaattcagagaaa--ggatcgtccctactttattattatcaaaacctagtgctagtagtctatgcgcaattat |
245 |
Q |
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| T |
66947 |
aaaattcagaggaattggatcttccctactttattattatcaaaacctagtgctagtagtctatgcgcaattat |
67020 |
T |
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