View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12268_high_16 (Length: 245)
Name: NF12268_high_16
Description: NF12268
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12268_high_16 |
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Alignment Details
Target: chr4 (Bit Score: 184; Significance: 1e-99; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 18 - 238
Target Start/End: Original strand, 23452720 - 23452940
Alignment:
| Q |
18 |
aaagacagtatataagcttgtgcttttaatgagnnnnnnnctacatttacaaatccagttttaaaaataccaagttaaacagacagatagaaattttcaa |
117 |
Q |
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| T |
23452720 |
aaagacagtatataagcttgtgcttttaatgagaaaaaaactacatttacaaatccagttttaaaaataccaagttacacagacagatagaaattttcaa |
23452819 |
T |
|
| Q |
118 |
agttctaatattaagaaataaaaatttgtccatccaactcaacaattgttaggcaattaaaggttaattcttataactcaatatgaacaattataaatct |
217 |
Q |
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|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
23452820 |
agttctaatattaagaaataaaaatttgtccatcaaactcaacaattgttaggcaattaaaggttaattcttataacacaatatgaacaattataaatct |
23452919 |
T |
|
| Q |
218 |
ttacaatatacacaggttctg |
238 |
Q |
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||||||||||||||| ||||| |
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| T |
23452920 |
ttacaatatacacagattctg |
23452940 |
T |
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