View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12268_high_3 (Length: 586)
Name: NF12268_high_3
Description: NF12268
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12268_high_3 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 252; Significance: 1e-140; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 279 - 574
Target Start/End: Complemental strand, 43612640 - 43612334
Alignment:
| Q |
279 |
atctaaaccgatacccaaaggatatatttagtttgatttttcaagttaattggatttatc-------gttggaaaccatacatacata----ttacattc |
367 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||| |
|
|
| T |
43612640 |
atctaaaccgatacacaaaggatatatttagtttgatttttcaagttaattggatttatcaaatcccgttggaaaccatacatacatacatattacattc |
43612541 |
T |
|
| Q |
368 |
atacacgtacctttgcacatttgagtctctcattcattctcaatttctcatatccaaatgtcatcatactcatattattatcatcctttccccaccagca |
467 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43612540 |
atacacgtacctttgcacatttgagtctctcattcattctcaatttctcatatccaaatgtcatcatactcatattattatcatcctttccccaccagca |
43612441 |
T |
|
| Q |
468 |
aagcttttccaatttggcagccactgtcacagcagcagcactctttcccatactacgcccgccaccggcagcagttactctcttctccacttctcagaca |
567 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43612440 |
aagcttttccaatttggcagccactgtcacagcaacagcactctttcccatactacggccgccaccggcagcagttactctcttctccacttctcagaca |
43612341 |
T |
|
| Q |
568 |
acacagg |
574 |
Q |
| |
|
||||||| |
|
|
| T |
43612340 |
acacagg |
43612334 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 19 - 244
Target Start/End: Complemental strand, 43612899 - 43612675
Alignment:
| Q |
19 |
gattgtctgtttgtgcgataatgtgaggctgtgaaaccaaattaaaagattgggttttgggtatgtacgatacttgtgccacacatttaaataataaagt |
118 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
43612899 |
gattgtctgtttgtgcgataatgtgaggctgtgaaaccaaattaaaagattgggttt-gggtatgtacgatgcttgtgccacacatttaaataataaagt |
43612801 |
T |
|
| Q |
119 |
aacaaagtgttacgtgtcaacgcaagaagattagttcaattgataaaaagttgattcataaatcacaacggtattttgctagtcgggtgactgacttctc |
218 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||| ||||| |
|
|
| T |
43612800 |
aacaaagtgttacgtgtcaacgcaagaagattggttcaattgataaaaagttgattcataaatcacaactatattttgctggtcgggtgactgagttctc |
43612701 |
T |
|
| Q |
219 |
tcaatcgtcacccgaaccaataatga |
244 |
Q |
| |
|
|||||||||||||||||||||||||| |
|
|
| T |
43612700 |
tcaatcgtcacccgaaccaataatga |
43612675 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 148 - 178
Target Start/End: Original strand, 47642283 - 47642313
Alignment:
| Q |
148 |
attagttcaattgataaaaagttgattcata |
178 |
Q |
| |
|
||||||||||||||||||||||||||||||| |
|
|
| T |
47642283 |
attagttcaattgataaaaagttgattcata |
47642313 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University