View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12268_high_6 (Length: 396)
Name: NF12268_high_6
Description: NF12268
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12268_high_6 |
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Alignment Details
Target: chr3 (Bit Score: 316; Significance: 1e-178; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 316; E-Value: 1e-178
Query Start/End: Original strand, 26 - 365
Target Start/End: Original strand, 25520787 - 25521126
Alignment:
| Q |
26 |
gcggtcgctacactgtgcaacggttgtagaggatccttgtaatacttttatttattttactcaccggttttggaaccataaaacctgcgacaagattcca |
125 |
Q |
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| T |
25520787 |
gcggtcactacactgtgtaacggtcgtagaggatccttgtaatacttttatttattttactcaccggttttggaaccataaaacctgcgacaagattcca |
25520886 |
T |
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| Q |
126 |
tagagagtaaaatgcagaagaagttacagctgcgaggtgttgggttggtgtaacaccaattgccattatgccgtaaaaggtgaaataggtaaatgtgagg |
225 |
Q |
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| T |
25520887 |
tagagagtaaaatgcagaagaagttacagctgcgaggtgttgggttggtgtaacaccaattgccattatgccgtaaaaggtgaaataggtaaatgtgagg |
25520986 |
T |
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| Q |
226 |
aacatgaaaactagatacatcaaaaactttcctgcattagagaggaagaaaaaatgtatcacattagtacttatcggaggacgaactttgagatacttaa |
325 |
Q |
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| T |
25520987 |
aacatgaaaactagatatatcaaaaactttcctgcattagagaggaagaaaaaatgtatcacattagtacttatcggaggacgaactttgagatacttaa |
25521086 |
T |
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| Q |
326 |
tgagagaaaaatagaaatgtctgtgtgaaagtttcttaat |
365 |
Q |
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| T |
25521087 |
tgagagaaaaatataaatgtctatgtgaaagtttcttaat |
25521126 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 117 - 261
Target Start/End: Complemental strand, 29780263 - 29780119
Alignment:
| Q |
117 |
aagattccatagagagtaaaatgcagaagaagttacagctgcgaggtgttgggttggtgtaacaccaattgccattatgccgtaaaaggtgaaataggta |
216 |
Q |
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| T |
29780263 |
aagattccacagggagtaaaatgctgaagaaataacagcagcaaattgttgtgaaggtgtaagaccaaccgccatcattccataaaaggtgaagtaggta |
29780164 |
T |
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| Q |
217 |
aatgtgaggaacatgaaaactagatacatcaaaaactttcctgca |
261 |
Q |
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| T |
29780163 |
aaggttaagaacatgaacaagagatagagcaaaaacttccctgca |
29780119 |
T |
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