View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12268_high_8 (Length: 386)
Name: NF12268_high_8
Description: NF12268
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12268_high_8 |
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Alignment Details
Target: chr7 (Bit Score: 340; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 340; E-Value: 0
Query Start/End: Original strand, 21 - 376
Target Start/End: Original strand, 29963955 - 29964310
Alignment:
| Q |
21 |
agacccatgtcttttgataaactatagataatgtgaatgagatctttcttgcattcttccatttcttggataacttccgcgacacttacgtacgttggtg |
120 |
Q |
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| T |
29963955 |
agacccatgtcttttgataaactatagataatgtgaatgagatctttcttgcattcttccatttcttggataacttccgcgacacttacgtacgttggtg |
29964054 |
T |
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| Q |
121 |
tgttgaaaacggtccccgaataaatttcatcacataccaaatggatgttgttttcattgatgaaactcactatgctctttagtgtatctttttctaatgt |
220 |
Q |
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| T |
29964055 |
tgttgaaaacggtccccgaataaatttcatcacataccaaatggatgttgttttcattgatgaaactcactatgctctttagtgtatctttttctaatgt |
29964154 |
T |
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| Q |
221 |
tgttcctaaagggtttgatggatttgttatgattaatcctttcacattgatgttttcttcttgtgcttttttatgagcttcttcaagtgcttctcttgtt |
320 |
Q |
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| T |
29964155 |
tgttcctaaaggatttgatggatttgttatgattaacccttttacattgatgttttcttcttgtgcttttttatgagcttcttcaagtgcttctcttgtt |
29964254 |
T |
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| Q |
321 |
atcttgaaattgtttgagctatgacattggacaggaattagttgcacacaggttct |
376 |
Q |
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| T |
29964255 |
atcttgaaattgtttgagctatgacattggacaggaattagttgcacaccggttct |
29964310 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 82; Significance: 1e-38; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 195 - 360
Target Start/End: Complemental strand, 10969083 - 10968918
Alignment:
| Q |
195 |
ctctttagtgtatctttttctaatgttgttcctaaagggtttgatggatttgttatgattaatcctttcacattgatgttttcttcttgtgcttttttat |
294 |
Q |
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| T |
10969083 |
ctctttagtgtctctttgtctaaggttgttcctaatgggttggaggggtttgttatgatcaacccttttacattgatgttgttttcttgtgcttttttgt |
10968984 |
T |
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| Q |
295 |
gagcttcttcaagtgcttctcttgttatcttgaaattgtttgagctatgacattggacaggaatta |
360 |
Q |
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| T |
10968983 |
atgctacttcaagtgcttctcttgttattttgaagttgttggagctatcacaatggacaggaatta |
10968918 |
T |
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