View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12268_low_1 (Length: 599)
Name: NF12268_low_1
Description: NF12268
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12268_low_1 |
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Alignment Details
Target: chr4 (Bit Score: 531; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 531; E-Value: 0
Query Start/End: Original strand, 9 - 582
Target Start/End: Complemental strand, 36051667 - 36051091
Alignment:
| Q |
9 |
cagaacctgtgattttagtggggtgcggtggttgaaggtcaacaatggagatcaggtttgttaagttttctgcggtacctgatgacaatttcgtgggtgg |
108 |
Q |
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| T |
36051667 |
cagaacctatgattttagtggggtgcggtggttgaaggtcaacaatggagatcaggtttgttaagttttctgcggtacctgatgacaatttcatgggtgg |
36051568 |
T |
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| Q |
109 |
tgagtatttgtgtaaagtaacatgagcatataatggatcgatacctgcagcaacacttccatcccgcggtttcggcggcggcaacggtggagccaaggca |
208 |
Q |
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| T |
36051567 |
tgagtatttgtgtaaagtaacaggagcatataatggatcgatacctgcagcaacacttccatccggcggtttcggcggcggcaacggtggagccaaggca |
36051468 |
T |
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| Q |
209 |
gtgtctagcggttttggagattgtggaccgagagcaggattgctaaatttcttgtctcccgtcatgacgatgacgctcctctgttgtacgccatcaaagg |
308 |
Q |
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| T |
36051467 |
gtgtctagcggttttggagattgtggaccgagagcaggattgctaaatttcttgtctcccgtcatgacgatgacgctcctctgttgtacgccatcaatgg |
36051368 |
T |
|
| Q |
309 |
aatctgcaattttcagttgaacaacctgaacttccaattttagtggggaatccagatcctgttcacccgtaatgaaagctatggaatcaacataatcgtg |
408 |
Q |
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| T |
36051367 |
aatctgcaatttccagttgaacaacctgaacttccgattttagtggggaatccagatcctgttcacccgtaatgaaagctatggaatcaacataatcgtg |
36051268 |
T |
|
| Q |
409 |
agtgatggagggcttctcaacaagctttgagcatggtggaagatcttgattgtgttcacctggtatgtctagtacgagatcaacaacacaatcggaaact |
508 |
Q |
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| T |
36051267 |
agtgatggagggcttctcaacaagctttgagcatggtggaagatcttgattgtgttcacctggtatgtctagtacgagatcaacaacacaatcggaaact |
36051168 |
T |
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| Q |
509 |
cgggaag---gcttcacctccaactttgaggattcacatgtttcctccgtttcttcatctaacacaggcaagagatg |
582 |
Q |
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| T |
36051167 |
cgggaaggctgcttcacctccaactttgaggattcacatgcttcctccgtttcttcatctaacacaggcaagagatg |
36051091 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 38; Significance: 0.000000000004; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 72 - 189
Target Start/End: Complemental strand, 30453739 - 30453622
Alignment:
| Q |
72 |
agttttctgcggtacctgatgacaatttcgtgggtggtgagtatttgtgtaaagtaacatgagcatataatggatcgatacctgcagcaacacttccatc |
171 |
Q |
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| T |
30453739 |
agttttctgcggtaccaaataacaatacagtgggtgtcgggtaactgtgtaaagtaacatgagcgcataaaggattgatacctgtagcaacacttcgatc |
30453640 |
T |
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| Q |
172 |
ccgcggtttcggcggcgg |
189 |
Q |
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| T |
30453639 |
tggtggtttcggcggcgg |
30453622 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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