View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12268_low_10 (Length: 321)
Name: NF12268_low_10
Description: NF12268
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12268_low_10 |
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Alignment Details
Target: chr5 (Bit Score: 223; Significance: 1e-123; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 1 - 309
Target Start/End: Complemental strand, 36722699 - 36722388
Alignment:
| Q |
1 |
ctacttcaagcagtatgagtagtactgttgaatctttgactgggcctaggattgttcaggttgttggttcttcgtcttcttctgctgtttccagggttcc |
100 |
Q |
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| T |
36722699 |
ctacttcaagcagtatgagtagtactgttgaatctttgagtgggcctaggattgttcaggttgttggttcttcgtcttcttctgctgtttccagggttcc |
36722600 |
T |
|
| Q |
101 |
tattgttg---------gtggtggagctgctcaagctgttggtgctgctggtgctcgtgctggcgaaaaatttcatagtggctgtgattcatctacatct |
191 |
Q |
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|||||||| ||||||||||||||||| ||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
36722599 |
tattgttgctggtgctggtggtggagctgctcaacctgttggtgctgctgctgctcgtgctggcaaaaaatttcatagtggctgtgattcatctacatct |
36722500 |
T |
|
| Q |
192 |
gctgttgatgatgacgaaaattttgttattctcagttcttttactgcttcagtgaagaagcctacggtccaggctcatgctccgacccaggctcatgttc |
291 |
Q |
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|||||||||||||||||||||| ||||||||||||||||| |||||||||||||| |||||||| ||||||| |||||| ||||||||||||||| |
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| T |
36722499 |
gctgttgatgatgacgaaaattgtgttattctcagttcttctactgcttcagtgaggaagcctatggtccag------gctccggcccaggctcatgttc |
36722406 |
T |
|
| Q |
292 |
atgctcccgcacaggttc |
309 |
Q |
| |
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|||||||||| ||||||| |
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| T |
36722405 |
atgctcccgctcaggttc |
36722388 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 152; E-Value: 2e-80
Query Start/End: Original strand, 1 - 297
Target Start/End: Complemental strand, 36709830 - 36709522
Alignment:
| Q |
1 |
ctacttcaagcagtatgagtagtactgttgaatctttgactgggcctaggattgttcaggttgttggttcttcgtcttcttctgctgtttccagggttcc |
100 |
Q |
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||||||||||| ||||||||||||| ||||| ||||| | ||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||| |
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| T |
36709830 |
ctacttcaagcggtatgagtagtaccgttgagtctttcagtgggcctaggattgttcagcttgttggttcttcgtcttcttctgttgtttccagggttcc |
36709731 |
T |
|
| Q |
101 |
tattgttggtggtggagctg------------ctcaagctgttggtgctgctggtgctcgtgctggcgaaaaatttcatagtggctgtgattcatctaca |
188 |
Q |
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|| |||||||||||| |||| ||||||||||||||| |||||||||| ||||||| ||| | ||||||||||| |||||||||||| || |
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| T |
36709730 |
tactgttggtggtggtgctggtggtggagttgctcaagctgttggtggtgctggtgctggtgctggtgaagattttcatagtggttgtgattcatcttca |
36709631 |
T |
|
| Q |
189 |
tctgctgttgatgatgacgaaaattttgttattctcagttcttttactgcttcagtgaagaagcctacggtccaggctcatgctccgacccaggctcatg |
288 |
Q |
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|||| |||||||||||||||| ||| ||||||||||||||||| | | |||||||||| ||||||| |||||||||| ||||||| | |||| ||||| | |
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| T |
36709630 |
tctgttgttgatgatgacgaagattgtgttattctcagttcttctgccgcttcagtgaggaagcctccggtccaggcccatgctctggcccaagctcagg |
36709531 |
T |
|
| Q |
289 |
ttcatgctc |
297 |
Q |
| |
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||||||||| |
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| T |
36709530 |
ttcatgctc |
36709522 |
T |
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