View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12268_low_17 (Length: 232)

Name: NF12268_low_17
Description: NF12268
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12268_low_17
NF12268_low_17
[»] chr6 (5 HSPs)
chr6 (19-213)||(17590433-17590627)
chr6 (165-213)||(29284836-29284884)
chr6 (159-189)||(6419871-6419901)
chr6 (159-213)||(12201754-12201807)
chr6 (159-213)||(12481359-12481413)
[»] chr8 (3 HSPs)
chr8 (161-213)||(32726519-32726571)
chr8 (159-213)||(10338819-10338873)
chr8 (161-213)||(28210351-28210403)
[»] chr7 (3 HSPs)
chr7 (159-213)||(23371003-23371057)
chr7 (159-213)||(10094519-10094573)
chr7 (159-213)||(10574459-10574513)
[»] chr1 (7 HSPs)
chr1 (165-213)||(24114668-24114716)
chr1 (165-212)||(10782585-10782632)
chr1 (159-210)||(50107907-50107957)
chr1 (159-213)||(12871699-12871753)
chr1 (159-189)||(37822358-37822388)
chr1 (159-213)||(45750556-45750610)
chr1 (161-213)||(29069831-29069883)
[»] chr3 (5 HSPs)
chr3 (159-210)||(4219258-4219308)
chr3 (159-189)||(2147805-2147835)
chr3 (159-189)||(11819161-11819191)
chr3 (159-213)||(48652437-48652491)
chr3 (159-188)||(13701994-13702023)
[»] scaffold0294 (1 HSPs)
scaffold0294 (159-213)||(4056-4110)
[»] chr5 (2 HSPs)
chr5 (159-189)||(7771834-7771864)
chr5 (159-189)||(42396525-42396555)
[»] chr4 (4 HSPs)
chr4 (159-213)||(7060402-7060456)
chr4 (159-213)||(24825727-24825781)
chr4 (161-189)||(7861219-7861247)
chr4 (161-189)||(42197634-42197662)
[»] chr2 (2 HSPs)
chr2 (159-189)||(5754366-5754396)
chr2 (159-213)||(41797672-41797726)


Alignment Details
Target: chr6 (Bit Score: 179; Significance: 9e-97; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 179; E-Value: 9e-97
Query Start/End: Original strand, 19 - 213
Target Start/End: Original strand, 17590433 - 17590627
Alignment:
Q  19 gtcacaacatctggcgaaaaattaaaattttaaggatcagaaacgtaatctattttgttcatgtgagttaaagaaaagattactcgtacatatttcctaa 118  Q
    |||||||| ||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17590433 gtcacaacgtctagcgaaaaattaaaattttaaggatcagaaacgaaatctattttgttcatgtgagttaaagaaaagattactcgtacatatttcctaa 17590532  T
Q  119 atattattaaataagtgatttccacgtgtatgcatctttctctttcatttgtttttgtgatttcgtcgtcttaacacgattttgtttcttttgat 213  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17590533 atattattaaataagtgatttccacctgtatgcatctttctctttcatttgtttttgtgatttcgtcgtcttaacacgattttgtttcttttgat 17590627  T

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Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 165 - 213
Target Start/End: Original strand, 29284836 - 29284884
Alignment:
Q  165 atttgtttttgtgatttcgtcgtcttaacacgattttgtttcttttgat 213  Q
    ||||||||||||||||||||||||||  ||||| ||||||| |||||||    
T  29284836 atttgtttttgtgatttcgtcgtctttgcacgactttgtttgttttgat 29284884  T

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Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 159 - 189
Target Start/End: Complemental strand, 6419901 - 6419871
Alignment:
Q  159 tctttcatttgtttttgtgatttcgtcgtct 189  Q
    |||||||||||||||||||||||||||||||    
T  6419901 tctttcatttgtttttgtgatttcgtcgtct 6419871  T

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Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 159 - 213
Target Start/End: Original strand, 12201754 - 12201807
Alignment:
Q  159 tctttcatttgtttttgtgatttcgtcgtcttaacacgattttgtttcttttgat 213  Q
    |||||| |||||||||||||||| |||||  |||||||||||||||| |||||||    
T  12201754 tctttcctttgtttttgtgattttgtcgt-ataacacgattttgtttattttgat 12201807  T

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Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 159 - 213
Target Start/End: Complemental strand, 12481413 - 12481359
Alignment:
Q  159 tctttcatttgtttttgtgatttcgtcgtcttaacacgattttgtttcttttgat 213  Q
    |||||| ||||||||||||||||||||||||  | |||| ||||||| |||||||    
T  12481413 tctttcgtttgtttttgtgatttcgtcgtctctaaacgactttgtttgttttgat 12481359  T

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Target: chr8 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 161 - 213
Target Start/End: Original strand, 32726519 - 32726571
Alignment:
Q  161 tttcatttgtttttgtgatttcgtcgtcttaacacgattttgtttcttttgat 213  Q
    |||||||||||| |||||||||| ||||||||||| |||||||||||||||||    
T  32726519 tttcatttgtttatgtgatttcgccgtcttaacacaattttgtttcttttgat 32726571  T

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Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 159 - 213
Target Start/End: Complemental strand, 10338873 - 10338819
Alignment:
Q  159 tctttcatttgtttttgtgatttcgtcgtcttaacacgattttgtttcttttgat 213  Q
    |||||| |||||||||||||||||||||||||   |||| ||||||| |||||||    
T  10338873 tctttcgtttgtttttgtgatttcgtcgtctttgaacgactttgtttgttttgat 10338819  T

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Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 161 - 213
Target Start/End: Original strand, 28210351 - 28210403
Alignment:
Q  161 tttcatttgtttttgtgatttcgtcgtcttaacacgattttgtttcttttgat 213  Q
    |||| ||||||||||||| |||  ||||||||||| ||||||||| |||||||    
T  28210351 tttcgtttgtttttgtgagttcaccgtcttaacacaattttgtttgttttgat 28210403  T

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Target: chr7 (Bit Score: 35; Significance: 0.00000000008; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 159 - 213
Target Start/End: Complemental strand, 23371057 - 23371003
Alignment:
Q  159 tctttcatttgtttttgtgatttcgtcgtcttaacacgattttgtttcttttgat 213  Q
    ||||||||||||||  |||||||| ||||||||||||||||||| || |||||||    
T  23371057 tctttcatttgtttgcgtgatttcatcgtcttaacacgattttgattgttttgat 23371003  T

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Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 159 - 213
Target Start/End: Original strand, 10094519 - 10094573
Alignment:
Q  159 tctttcatttgtttttgtgatttcgtcgtcttaacacgattttgtttcttttgat 213  Q
    |||||| |||||||||||||||||||||||||   |||| ||||||| |||||||    
T  10094519 tctttcgtttgtttttgtgatttcgtcgtctttgaacgactttgtttgttttgat 10094573  T

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Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 159 - 213
Target Start/End: Original strand, 10574459 - 10574513
Alignment:
Q  159 tctttcatttgtttttgtgatttcgtcgtcttaacacgattttgtttcttttgat 213  Q
    |||||| |||||||||||||||||||||||||   |||| ||||||| |||||||    
T  10574459 tctttcgtttgtttttgtgatttcgtcgtctttgaacgactttgtttgttttgat 10574513  T

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Target: chr1 (Bit Score: 33; Significance: 0.000000001; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 165 - 213
Target Start/End: Complemental strand, 24114716 - 24114668
Alignment:
Q  165 atttgtttttgtgatttcgtcgtcttaacacgattttgtttcttttgat 213  Q
    |||||||||||||||||||| ||||| |||||| ||||||| |||||||    
T  24114716 atttgtttttgtgatttcgttgtctttacacgactttgtttgttttgat 24114668  T

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Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 165 - 212
Target Start/End: Original strand, 10782585 - 10782632
Alignment:
Q  165 atttgtttttgtgatttcgtcgtcttaacacgattttgtttcttttga 212  Q
    ||||||||||||||||||||| | || |||||||||||||| ||||||    
T  10782585 atttgtttttgtgatttcgtcatttttacacgattttgtttgttttga 10782632  T

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Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 159 - 210
Target Start/End: Complemental strand, 50107957 - 50107907
Alignment:
Q  159 tctttcatttgtttttgtgatttcgtcgtcttaacacgattttgtttctttt 210  Q
    |||||| ||||||||||||||||||||||| | |||||||||||||| ||||    
T  50107957 tctttcgtttgtttttgtgatttcgtcgtc-tcacacgattttgtttatttt 50107907  T

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Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 159 - 213
Target Start/End: Original strand, 12871699 - 12871753
Alignment:
Q  159 tctttcatttgtttttgtgatttcgtcgtcttaacacgattttgtttcttttgat 213  Q
    |||||| |||||||||||||||||||||||||  ||||| | ||||| |||||||    
T  12871699 tctttcgtttgtttttgtgatttcgtcgtctttgcacgactctgtttgttttgat 12871753  T

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Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 159 - 189
Target Start/End: Complemental strand, 37822388 - 37822358
Alignment:
Q  159 tctttcatttgtttttgtgatttcgtcgtct 189  Q
    |||||||||||||||||||||||||||||||    
T  37822388 tctttcatttgtttttgtgatttcgtcgtct 37822358  T

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Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 159 - 213
Target Start/End: Original strand, 45750556 - 45750610
Alignment:
Q  159 tctttcatttgtttttgtgatttcgtcgtcttaacacgattttgtttcttttgat 213  Q
    |||||| |||||||||||||||||||||||||   |||| ||||||| |||||||    
T  45750556 tctttcgtttgtttttgtgatttcgtcgtctttgaacgactttgtttgttttgat 45750610  T

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Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 161 - 213
Target Start/End: Complemental strand, 29069883 - 29069831
Alignment:
Q  161 tttcatttgtttttgtgatttcgtcgtcttaacacgattttgtttcttttgat 213  Q
    |||| ||||||||| ||||||||||||||| |||||| | ||||| |||||||    
T  29069883 tttcgtttgtttttatgatttcgtcgtctttacacgactctgtttgttttgat 29069831  T

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Target: chr3 (Bit Score: 32; Significance: 0.000000005; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 159 - 210
Target Start/End: Original strand, 4219258 - 4219308
Alignment:
Q  159 tctttcatttgtttttgtgatttcgtcgtcttaacacgattttgtttctttt 210  Q
    |||||| ||||||||| ||||||||||||| |||||||||||||||| ||||    
T  4219258 tctttcgtttgtttttatgatttcgtcgtc-taacacgattttgtttatttt 4219308  T

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Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 159 - 189
Target Start/End: Original strand, 2147805 - 2147835
Alignment:
Q  159 tctttcatttgtttttgtgatttcgtcgtct 189  Q
    |||||||||||||||||||||||||||||||    
T  2147805 tctttcatttgtttttgtgatttcgtcgtct 2147835  T

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Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 159 - 189
Target Start/End: Original strand, 11819161 - 11819191
Alignment:
Q  159 tctttcatttgtttttgtgatttcgtcgtct 189  Q
    |||||||||||||||||||||||||||||||    
T  11819161 tctttcatttgtttttgtgatttcgtcgtct 11819191  T

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Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 159 - 213
Target Start/End: Complemental strand, 48652491 - 48652437
Alignment:
Q  159 tctttcatttgtttttgtgatttcgtcgtcttaacacgattttgtttcttttgat 213  Q
    |||||| ||||||||||||||||||||||||  | |||| ||||||| |||||||    
T  48652491 tctttcgtttgtttttgtgatttcgtcgtctctaaacgactttgtttgttttgat 48652437  T

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Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 159 - 188
Target Start/End: Complemental strand, 13702023 - 13701994
Alignment:
Q  159 tctttcatttgtttttgtgatttcgtcgtc 188  Q
    ||||||||||||||||||||||||||||||    
T  13702023 tctttcatttgtttttgtgatttcgtcgtc 13701994  T

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Target: scaffold0294 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0294
Description:

Target: scaffold0294; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 159 - 213
Target Start/End: Complemental strand, 4110 - 4056
Alignment:
Q  159 tctttcatttgtttttgtgatttcgtcgtcttaacacgattttgtttcttttgat 213  Q
    |||||| |||||||||||||||||||||||||   |||| ||||||| |||||||    
T  4110 tctttcgtttgtttttgtgatttcgtcgtctttgaacgactttgtttgttttgat 4056  T

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Target: chr5 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 159 - 189
Target Start/End: Complemental strand, 7771864 - 7771834
Alignment:
Q  159 tctttcatttgtttttgtgatttcgtcgtct 189  Q
    |||||||||||||||||||||||||||||||    
T  7771864 tctttcatttgtttttgtgatttcgtcgtct 7771834  T

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Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 159 - 189
Target Start/End: Complemental strand, 42396555 - 42396525
Alignment:
Q  159 tctttcatttgtttttgtgatttcgtcgtct 189  Q
    |||||||||||||||||||||||||||||||    
T  42396555 tctttcatttgtttttgtgatttcgtcgtct 42396525  T

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Target: chr4 (Bit Score: 31; Significance: 0.00000002; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 159 - 213
Target Start/End: Original strand, 7060402 - 7060456
Alignment:
Q  159 tctttcatttgtttttgtgatttcgtcgtcttaacacgattttgtttcttttgat 213  Q
    |||||| |||||||||||||||||||||||||   |||| | |||||||||||||    
T  7060402 tctttcgtttgtttttgtgatttcgtcgtctttgaacgactctgtttcttttgat 7060456  T

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Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 159 - 213
Target Start/End: Original strand, 24825727 - 24825781
Alignment:
Q  159 tctttcatttgtttttgtgatttcgtcgtcttaacacgattttgtttcttttgat 213  Q
    |||||| |||||||||||||||||||||||||  ||||| | ||||| |||||||    
T  24825727 tctttcgtttgtttttgtgatttcgtcgtctttgcacgactctgtttgttttgat 24825781  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 161 - 189
Target Start/End: Complemental strand, 7861247 - 7861219
Alignment:
Q  161 tttcatttgtttttgtgatttcgtcgtct 189  Q
    |||||||||||||||||||||||||||||    
T  7861247 tttcatttgtttttgtgatttcgtcgtct 7861219  T

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Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 161 - 189
Target Start/End: Original strand, 42197634 - 42197662
Alignment:
Q  161 tttcatttgtttttgtgatttcgtcgtct 189  Q
    |||||||||||||||||||||||||||||    
T  42197634 tttcatttgtttttgtgatttcgtcgtct 42197662  T

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Target: chr2 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 159 - 189
Target Start/End: Original strand, 5754366 - 5754396
Alignment:
Q  159 tctttcatttgtttttgtgatttcgtcgtct 189  Q
    |||||||||||||||||||||||||||||||    
T  5754366 tctttcatttgtttttgtgatttcgtcgtct 5754396  T

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Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 159 - 213
Target Start/End: Original strand, 41797672 - 41797726
Alignment:
Q  159 tctttcatttgtttttgtgatttcgtcgtcttaacacgattttgtttcttttgat 213  Q
    |||||| ||||||||||||||||||||||||||  |||| | ||||| |||||||    
T  41797672 tctttcgtttgtttttgtgatttcgtcgtcttagaacgactctgtttgttttgat 41797726  T

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