View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12268_low_2 (Length: 597)
Name: NF12268_low_2
Description: NF12268
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12268_low_2 |
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Alignment Details
Target: chr1 (Bit Score: 547; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 547; E-Value: 0
Query Start/End: Original strand, 23 - 585
Target Start/End: Complemental strand, 6486188 - 6485626
Alignment:
| Q |
23 |
tggaagaatcttcaagaatattgcggattcaaatccaacagtggactggtgaaagcaatcataatatccggtcaaaagatcttcactggtcaccaagacg |
122 |
Q |
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| T |
6486188 |
tggaagaatcttcaagaatattgcggattcaaatccaacagtggactggtgaaagcaatcataatatccggtcaaaagatcttcactggtcaccaagacg |
6486089 |
T |
|
| Q |
123 |
gtaaaatccgtgtttggaaagtttctctcaagaaccctagcgttcacaaacgtgccggaacattaccaacactcaaagacatcttcaaaagctcgattaa |
222 |
Q |
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|||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
6486088 |
gtaaaatccgtgtttggaaagtctctctcaagaaccctagcgttcacaaacgtgctggaacattaccaacactcaaagacatcttcaaaagctcaattaa |
6485989 |
T |
|
| Q |
223 |
accaagcaattatgtcgaggttagaaaacaccgaactgcattatggatcaaacattcggatgcagtttcatgcctaagcctttctccagacaaaacctac |
322 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
6485988 |
accaagcaattatgtcgaggttagaaaacaccgaactgcattatggatcaaacattcggatgcagtttcatgcctaagtctttctccagacaaaacctac |
6485889 |
T |
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| Q |
323 |
ctctactctgcttcatgggacagaaccgtcaaagtttggagaatcgccgattcaaagtgcttggaatccattacttcccatgaggatgcagttaacgccg |
422 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6485888 |
ctctactctgcttcatgggacagaaccgtcaaagtttggagaatcgccgattcaaagtgcttggaatccattacttcccatgaggatgcagttaacgccg |
6485789 |
T |
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| Q |
423 |
tcgtttgtggaaacgacggaattgttttctctggttcagcagacggaacagttaaagtgtggcgaagagaaccacgtggtaaagcaacaaaacatgtaat |
522 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6485788 |
tcgtttgtggaaacgacggaattgttttctctggttcagcagacggaacagttaaagtgtggcgaagagaaccacgtggtaaagcaacaaaacatgtaat |
6485689 |
T |
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| Q |
523 |
ggttaaacaacttttaaaacaagaatgtgcagtaactgctttagcaattgacagcacaggttc |
585 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6485688 |
ggttaaacaacttttaaaacaagaatgtgcagtaactgctttagcaattgacagcacaggttc |
6485626 |
T |
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