View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12268_low_4 (Length: 485)
Name: NF12268_low_4
Description: NF12268
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12268_low_4 |
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Alignment Details
Target: chr2 (Bit Score: 452; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 452; E-Value: 0
Query Start/End: Original strand, 17 - 468
Target Start/End: Original strand, 37726487 - 37726938
Alignment:
| Q |
17 |
gtgatctgctacatatgtttgcctgtgcctatctcattctaactcttttgagcttcagtcttggataatttttcaaaaataagaaactaacctaacaaaa |
116 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37726487 |
gtgatctgctacatatgtttgcctgtgcctatctcattctaactcttttgagcttcagtcttggataatttttcaaaaataagaaactaacctaacaaaa |
37726586 |
T |
|
| Q |
117 |
ttcattgtttctgttcccttgaacagactgcaaagcaagttccagatagtctcggggtgttgtttttctgttctcttcggttaaatcctgatggaagtca |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37726587 |
ttcattgtttctgttcccttgaacagactgcaaagcaagttccagatagtctcggggtgttgtttttctgttctcttcggttaaatcctgatggaagtca |
37726686 |
T |
|
| Q |
217 |
tgccaccaagattattcacaaatcacaaataatgcatatgagagtaaacagtcagatcatgctaagatacaattaaactacaatatcacgactcttcttt |
316 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37726687 |
tgccaccaagattattcacaaatcacaaataatgcatatgagagtaaacagtcagatcatgctaagatacaattaaactacaatatcacgactcttcttt |
37726786 |
T |
|
| Q |
317 |
ctgtcttccgatatttgtaacggttcacaacctacccataaataagaaccaaacagaaactggagaaaactatcctatttcagctactttagacgcagaa |
416 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37726787 |
ctgtcttccgatatttgtaacggttcacaacctacccataaataagaaccaaacagaaactggagaaaactatcctatttcagctactttagacgcagaa |
37726886 |
T |
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| Q |
417 |
tttgttcctcccaaatgctataacaagaatgtgctttgccacttgagtgact |
468 |
Q |
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| T |
37726887 |
tttgttcctcccaaatgctataacaagaatgtgctttgccacttgagtgact |
37726938 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 86; Significance: 7e-41; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 86; E-Value: 7e-41
Query Start/End: Original strand, 123 - 399
Target Start/End: Complemental strand, 34810297 - 34810030
Alignment:
| Q |
123 |
gtttctgttcccttgaacagactgcaaagcaagttccagatagtctcggggtgttgtttttctgttctcttcggttaaatcctgatggaagtcatgccac |
222 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||||||| || ||| |||||||||| ||||| ||||| ||| || |||||| |||||| |
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| T |
34810297 |
gtttctgttcccttgaacagaccgcaaagcaagttccagatagtctcgtggagttatttttctgttatcttcagttaagtccaaatagaagtcctgccac |
34810198 |
T |
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| Q |
223 |
caagattattcacaaatcacaaataatgcatatgagagtaaacagtcagatcatgcta----agatacaattaaactacaatatcacgactcttctttct |
318 |
Q |
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||||||||||||| ||||| ||| |||||| |||||||||||||||||||| ||| || ||||||||||||||| | |||||||| | | |
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| T |
34810197 |
caagattattcac-------aaatagtgc--atgagactaaacagtcagatcatgctaagagagagaccattaaactacaatattatgactcttccattt |
34810107 |
T |
|
| Q |
319 |
gtcttccgatatttgtaacggttcacaacctacccataaataagaaccaaacagaaactggagaaaactatcctatttcag |
399 |
Q |
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||||||| |||||| || ||||| |||||||||| ||||| ||||||| ||| ||| ||||||| ||||||||||| |
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| T |
34810106 |
gtcttccagtatttgcaatggttcgcaacctaccc----gtaagagccaaacaaaaattggggaaaactgtcctatttcag |
34810030 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 38 - 119
Target Start/End: Original strand, 25899120 - 25899202
Alignment:
| Q |
38 |
cctgtgcctatctcattctaactcttttgagcttcagtcttggataatttttcaaaaataaga-aactaacctaacaaaattc |
119 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||| ||||| |||||||||||| |
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| T |
25899120 |
cctgtgcctatcccattctaactcttttgagcttcagtcttggataatttttagaaaataagactactaatctaacaaaattc |
25899202 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 29 - 95
Target Start/End: Complemental strand, 34810596 - 34810530
Alignment:
| Q |
29 |
atatgtttgcctgtgcctatctcattctaactcttttgagcttcagtcttggataatttttcaaaaa |
95 |
Q |
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|||||||||||||||||||| ||||||||||| ||||||||| | |||| |||||||||| ||||| |
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| T |
34810596 |
atatgtttgcctgtgcctatgccattctaactcctttgagctttaatcttagataattttttaaaaa |
34810530 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 36 - 81
Target Start/End: Original strand, 16488473 - 16488518
Alignment:
| Q |
36 |
tgcctgtgcctatctcattctaactcttttgagcttcagtcttgga |
81 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
16488473 |
tgcctgtgcctatcccattctaactcttttgagcttcagtcttgga |
16488518 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 36 - 81
Target Start/End: Complemental strand, 21814437 - 21814392
Alignment:
| Q |
36 |
tgcctgtgcctatctcattctaactcttttgagcttcagtcttgga |
81 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
21814437 |
tgcctgtgcctatcccattctaactcttttgagcttcagtcttgga |
21814392 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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