View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12268_low_5 (Length: 482)
Name: NF12268_low_5
Description: NF12268
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12268_low_5 |
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Alignment Details
Target: chr8 (Bit Score: 326; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 326; E-Value: 0
Query Start/End: Original strand, 12 - 463
Target Start/End: Complemental strand, 17996130 - 17995686
Alignment:
| Q |
12 |
agagatgggagacagaaagatgctcctgcatattgaatgtatgaaggatattgatccagttcacaatagccatctagcttggtgttattcaatgttttct |
111 |
Q |
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| T |
17996130 |
agagatgggagacagaaagatgcttttgcatattgaaggtatgaaggatattgacccggttcgcaatagccatctagcttggtgatatt-------ttct |
17996038 |
T |
|
| Q |
112 |
tcggttagaaggtggacacctcagttggtggcaaatagtagggcggtttggctccatgttcatggtattcccctccatgtttgggatgaacccttgttca |
211 |
Q |
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| T |
17996037 |
tcggttagaaggtggacacctcagttggtggcagatagtatggcggtttggctccatgttcatggtattcccctccatgtttgggatgaacccttgttca |
17995938 |
T |
|
| Q |
212 |
agaagattggctctttgtttggggtattcttagattttgatgattacaccattgggagaaagaggatggatgtaaccatgatccaagtttcttttaagag |
311 |
Q |
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| T |
17995937 |
agaagattgactctttgtttggggtgttcttagattttgatgattacacaattgggagaaagaggttggatgtagccatgatccaagtttcttctaagag |
17995838 |
T |
|
| Q |
312 |
gagagcggtgattgatgagcacctgaatctgaaggttgtggttatggatttttgtttgtgggtggtggacgtaggtggtggacgacggtggccaccagat |
411 |
Q |
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||||| ||||||||||||||||||||||||||||||| ||| ||||||||||||||| ||||||||||| |||||||||||||| ||||||||||||||| |
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| T |
17995837 |
gagaggggtgattgatgagcacctgaatctgaaggttatgggtatggatttttgtttatgggtggtggaggtaggtggtggacggcggtggccaccagat |
17995738 |
T |
|
| Q |
412 |
cggagagaggtggagtgtgaggaggtctcctccatttgttcacgtgagggtg |
463 |
Q |
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|||||||||||||||||||||||||||| |||| ||| |||||| ||||||| |
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| T |
17995737 |
cggagagaggtggagtgtgaggaggtcttctccgttttttcacgagagggtg |
17995686 |
T |
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