View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12268_low_7 (Length: 389)
Name: NF12268_low_7
Description: NF12268
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12268_low_7 |
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Alignment Details
Target: chr5 (Bit Score: 247; Significance: 1e-137; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 12 - 266
Target Start/End: Complemental strand, 78011 - 77757
Alignment:
| Q |
12 |
ctgtgctctaaaatgtgaggaataccagtggaatcattgggaggagttcggaaaacaatgccaaagactttgttctcatctttgtttgaaacagagatga |
111 |
Q |
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| T |
78011 |
ctgtgctctaaaatgtgaggaataccagtggaatcattgggaggagttcggaaaacaatgccaaagactttgttctcatctttgtttgaaacagagatga |
77912 |
T |
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| Q |
112 |
cttgtgcacccgtcttgacgtgtttgaaaagtactgcttttgatttgcattctggaatgaattcttctgatactttctcaaaccctagttcacgagcaac |
211 |
Q |
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| T |
77911 |
cttgtgcacccgtcttgacgtgtttgaaaagtactgctattgatttgcattctggaatgaattcttctgatactttctcaaaccctagttcacgcgcaac |
77812 |
T |
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| Q |
212 |
ttcatccttcactacttcgccaccaccaatatctaccaaacccctcaaaatcatc |
266 |
Q |
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| T |
77811 |
ttcatccttcactacttcgccaccaccaatatctaccaaacccctcaaaatcatc |
77757 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 304 - 374
Target Start/End: Complemental strand, 77711 - 77641
Alignment:
| Q |
304 |
tggagagaaatagatagatagatacctggagaagaaacgagggaagctctggtggagaaatggttgcggtt |
374 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
77711 |
tggagagaaatagatagatagatacctggagaagaaacgagggaagctctggtggagaaatggttgcggtt |
77641 |
T |
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