View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12269_high_3 (Length: 387)

Name: NF12269_high_3
Description: NF12269
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12269_high_3
NF12269_high_3
[»] chr3 (7 HSPs)
chr3 (19-375)||(25867007-25867358)
chr3 (67-165)||(20192666-20192765)
chr3 (67-139)||(40122813-40122885)
chr3 (62-131)||(2201073-2201143)
chr3 (72-140)||(47904128-47904197)
chr3 (67-126)||(3044319-3044379)
chr3 (134-166)||(20874458-20874490)
[»] chr5 (11 HSPs)
chr5 (183-360)||(30218639-30218816)
chr5 (85-137)||(29117009-29117061)
chr5 (67-125)||(14295457-14295516)
chr5 (117-172)||(27153468-27153523)
chr5 (67-137)||(28586826-28586897)
chr5 (62-111)||(32059644-32059694)
chr5 (84-136)||(985573-985625)
chr5 (134-166)||(14257345-14257377)
chr5 (83-127)||(15074824-15074868)
chr5 (62-138)||(26209468-26209544)
chr5 (134-170)||(39257544-39257580)
[»] chr8 (7 HSPs)
chr8 (83-170)||(12224976-12225063)
chr8 (86-165)||(26479690-26479769)
chr8 (86-164)||(26820112-26820189)
chr8 (70-125)||(33209283-33209339)
chr8 (62-139)||(12361129-12361207)
chr8 (89-138)||(11119082-11119131)
chr8 (117-165)||(29097108-29097156)
[»] chr6 (7 HSPs)
chr6 (84-138)||(33068639-33068693)
chr6 (62-111)||(2027461-2027511)
chr6 (134-172)||(6963214-6963252)
chr6 (102-167)||(34404317-34404382)
chr6 (67-138)||(10452420-10452492)
chr6 (85-137)||(24836278-24836330)
chr6 (85-137)||(34429769-34429821)
[»] scaffold0024 (1 HSPs)
scaffold0024 (62-138)||(27514-27591)
[»] chr1 (8 HSPs)
chr1 (62-134)||(49517012-49517085)
chr1 (134-170)||(14737841-14737877)
chr1 (62-144)||(33527202-33527285)
chr1 (94-172)||(3052771-3052849)
chr1 (83-137)||(15360833-15360887)
chr1 (119-172)||(29929734-29929787)
chr1 (134-166)||(48146173-48146205)
chr1 (62-137)||(48830131-48830207)
[»] chr4 (4 HSPs)
chr4 (99-163)||(25717415-25717479)
chr4 (137-170)||(52645567-52645600)
chr4 (83-135)||(31038944-31038996)
chr4 (137-165)||(34375876-34375904)
[»] chr2 (3 HSPs)
chr2 (83-134)||(5511507-5511558)
chr2 (87-138)||(27288571-27288622)
chr2 (86-138)||(10143110-10143162)
[»] chr7 (3 HSPs)
chr7 (120-166)||(39711507-39711553)
chr7 (87-127)||(425903-425943)
chr7 (133-165)||(31691269-31691301)


Alignment Details
Target: chr3 (Bit Score: 293; Significance: 1e-164; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 293; E-Value: 1e-164
Query Start/End: Original strand, 19 - 375
Target Start/End: Original strand, 25867007 - 25867358
Alignment:
Q  19 aagaaaagcttaaaacattgtcgattacctctccgggatagccatgagaacagcttatagattaatgaaaacagtttgattttattttatcttgcattat 118  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||| ||||| |||||||||||||||||||||||||||||||    
T  25867007 aagaaaagcttaaaacattgtagattacctctccgggatagccatgaaaacagcttatagatgaatgacaacagtttgattttattttatcttgcattat 25867106  T
Q  119 agaaataacgtatacataagtgcttaattaagttgcttatccaaacaaggcctagaatattgtagcaaacctggaacatcagatagcatcaaatttagga 218  Q
    |||||||||||||||||||| ||||||||||||| |||||||||||| |||     |||||| |||||||||||||||||||||||||||||||||||||    
T  25867107 agaaataacgtatacataagcgcttaattaagtttcttatccaaacatggc-----atattgcagcaaacctggaacatcagatagcatcaaatttagga 25867201  T
Q  219 gcaacttccgacgaatttcttgtgcatgatgtacttcgcgaagaaaaatggcatgttcattgactccttgaattccaaaagtagaaggatgtgatcctaa 318  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  25867202 gcaacttccgacgaatttcctgtgcatgatgtacttcgcgaagaaaaatggcatgttcattgactccttgaattccaaaagtagaaggatgtgatcctag 25867301  T
Q  319 tgcaattactagcttatcatatgagactgtaaatttccaaggttctattctctgctc 375  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  25867302 tgcaattactagcttatcatatgagactgtaaatttccaaggttctattgtctgctc 25867358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 67 - 165
Target Start/End: Original strand, 20192666 - 20192765
Alignment:
Q  67 aacagcttatagatta-atgaaaacagtttgattttattttatcttgcattatagaaataacgtatacataagtgcttaattaagttgcttatccaaaca 165  Q
    |||||||||||||||| |||||||| |||||| |||||||||||||   ||||| ||||| | ||||||||||  ||||||| || || |||||||||||    
T  20192666 aacagcttatagattatatgaaaactgtttgactttattttatcttttgttatataaatagcttatacataagcacttaattgagctgtttatccaaaca 20192765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 67 - 139
Target Start/End: Original strand, 40122813 - 40122885
Alignment:
Q  67 aacagcttatagattaatgaaaacagtttgattttattttatcttgcattatagaaataacgtatacataagt 139  Q
    |||| ||||||| || ||||||||||||||| |||||||||||||   |||| |||||| | |||||||||||    
T  40122813 aacaacttatagctttatgaaaacagtttgactttattttatcttttgttattgaaatagcttatacataagt 40122885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 62 - 131
Target Start/End: Complemental strand, 2201143 - 2201073
Alignment:
Q  62 atgagaacagcttatagatta-atgaaaacagtttgattttattttatcttgcattatagaaataacgtat 131  Q
    |||| |||||||||||| ||| ||||||||||||||| ||| ||||||||| ||| |||||| || |||||    
T  2201143 atgaaaacagcttatagcttatatgaaaacagtttgactttgttttatctttcataatagaagtagcgtat 2201073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 72 - 140
Target Start/End: Original strand, 47904128 - 47904197
Alignment:
Q  72 cttatagatta-atgaaaacagtttgattttattttatcttgcattatagaaataacgtatacataagtg 140  Q
    ||||||||||| ||||||| || ||||||| ||||||| |||| ||||||||||| | ||| ||||||||    
T  47904128 cttatagattatatgaaaatagcttgatttcattttatgttgcgttatagaaatagcttattcataagtg 47904197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 67 - 126
Target Start/End: Original strand, 3044319 - 3044379
Alignment:
Q  67 aacagcttatagatta-atgaaaacagtttgattttattttatcttgcattatagaaataa 126  Q
    ||||| |||||||||| |||||||||| ||| ||||||||| |||| | ||||||||||||    
T  3044319 aacaggttatagattatatgaaaacagattggttttattttgtctttcgttatagaaataa 3044379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 134 - 166
Target Start/End: Original strand, 20874458 - 20874490
Alignment:
Q  134 ataagtgcttaattaagttgcttatccaaacaa 166  Q
    |||||||||||||||||||| ||||||||||||    
T  20874458 ataagtgcttaattaagttgtttatccaaacaa 20874490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 78; Significance: 3e-36; HSPs: 11)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 183 - 360
Target Start/End: Original strand, 30218639 - 30218816
Alignment:
Q  183 gcaaacctggaacatcagatagcatcaaatttaggagcaacttccgacgaatttcttgtgcatgatgtacttcgcgaagaaaaatggcatgttcattgac 282  Q
    ||||||||||||| ||||| | ||||||||| ||||||||||| ||||| ||||| |||||||| |  ||||| ||||||||||| ||||||||||  ||    
T  30218639 gcaaacctggaacgtcagacatcatcaaattgaggagcaacttgcgacggatttcctgtgcatggtaaacttcacgaagaaaaattgcatgttcataaac 30218738  T
Q  283 tccttgaattccaaaagtagaaggatgtgatcctaatgcaattactagcttatcatatgagactgtaaatttccaagg 360  Q
    ||| |||||||||||||| |  || |||| ||||| ||||||||||| ||||||||| |||| |||||| ||||||||    
T  30218739 tccatgaattccaaaagtggtgggttgtgctcctagtgcaattactaacttatcataggagattgtaaacttccaagg 30218816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 85 - 137
Target Start/End: Original strand, 29117009 - 29117061
Alignment:
Q  85 gaaaacagtttgattttattttatcttgcattatagaaataacgtatacataa 137  Q
    ||||||||||||| |||||||||||||   ||||||||||||| |||||||||    
T  29117009 gaaaacagtttgactttattttatcttttgttatagaaataacatatacataa 29117061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 67 - 125
Target Start/End: Complemental strand, 14295516 - 14295457
Alignment:
Q  67 aacagcttatagatta-atgaaaacagtttgattttattttatcttgcattatagaaata 125  Q
    |||||||||||| ||| ||||||||||||||| |||||||||||||   |||||||||||    
T  14295516 aacagcttatagcttatatgaaaacagtttgactttattttatcttttgttatagaaata 14295457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 117 - 172
Target Start/End: Original strand, 27153468 - 27153523
Alignment:
Q  117 atagaaataacgtatacataagtgcttaattaagttgcttatccaaacaaggccta 172  Q
    ||||||| ||| ||||||||||  || |||||||||| ||||||||||||||||||    
T  27153468 atagaaaaaacttatacataagcactaaattaagttgtttatccaaacaaggccta 27153523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 67 - 137
Target Start/End: Original strand, 28586826 - 28586897
Alignment:
Q  67 aacagcttatagatta-atgaaaacagtttgattttattttatcttgcattatagaaataacgtatacataa 137  Q
    |||||||||||  ||| ||||||||||||||| |||||||||||||   |||||||||||  ||||||||||    
T  28586826 aacagcttataatttatatgaaaacagtttgactttattttatcttttgttatagaaatagtgtatacataa 28586897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 62 - 111
Target Start/End: Original strand, 32059644 - 32059694
Alignment:
Q  62 atgagaacagcttatagatta-atgaaaacagtttgattttattttatctt 111  Q
    |||| |||||||||||| ||| ||||||||||||||| |||||||||||||    
T  32059644 atgaaaacagcttatagcttatatgaaaacagtttgactttattttatctt 32059694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 84 - 136
Target Start/End: Complemental strand, 985625 - 985573
Alignment:
Q  84 tgaaaacagtttgattttattttatcttgcattatagaaataacgtatacata 136  Q
    |||||||||||||| |||||||||||||   |||| |||||||| ||||||||    
T  985625 tgaaaacagtttgactttattttatcttttgttatggaaataacatatacata 985573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 134 - 166
Target Start/End: Complemental strand, 14257377 - 14257345
Alignment:
Q  134 ataagtgcttaattaagttgcttatccaaacaa 166  Q
    |||||||||||||||||||| ||||||||||||    
T  14257377 ataagtgcttaattaagttgtttatccaaacaa 14257345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 83 - 127
Target Start/End: Original strand, 15074824 - 15074868
Alignment:
Q  83 atgaaaacagtttgattttattttatcttgcattatagaaataac 127  Q
    ||||||||||||||||| |||| ||||||  ||||||||||||||    
T  15074824 atgaaaacagtttgattatattctatcttttattatagaaataac 15074868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 62 - 138
Target Start/End: Original strand, 26209468 - 26209544
Alignment:
Q  62 atgagaacagcttatagattaa--tgaaaacagtttgattttattttatcttgcattatagaaataacgtatacataag 138  Q
    |||| |||||||||||| |||   |||||||| || || ||||||||||||||  ||||||||||||| ||||||||||    
T  26209468 atgaaaacagcttatagcttatattgaaaacaattggactttattttatcttg--ttatagaaataacttatacataag 26209544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 134 - 170
Target Start/End: Original strand, 39257544 - 39257580
Alignment:
Q  134 ataagtgcttaattaagttgcttatccaaacaaggcc 170  Q
    ||||| |||||||||||||| ||||||||||||||||    
T  39257544 ataagcgcttaattaagttgtttatccaaacaaggcc 39257580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 83 - 170
Target Start/End: Original strand, 12224976 - 12225063
Alignment:
Q  83 atgaaaacagtttgattttattttatcttgcattatagaaataacgtatacataagtgcttaattaagttgcttatccaaacaaggcc 170  Q
    ||||||| ||||||| |||||||||||||   |  |||||||||| ||||||||||  ||||||||||||| ||||||||||| ||||    
T  12224976 atgaaaatagtttgactttattttatcttttgtcttagaaataacttatacataagctcttaattaagttgtttatccaaacagggcc 12225063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 86 - 165
Target Start/End: Complemental strand, 26479769 - 26479690
Alignment:
Q  86 aaaacagtttgattttattttatcttgcattatagaaataacgtatacataagtgcttaattaagttgcttatccaaaca 165  Q
    ||||||||||||||||||||||||||  ||||||||| ||   |||||| ||||  ||||||||| || |||||||||||    
T  26479769 aaaacagtttgattttattttatctttgattatagaactagtttatacaaaagtttttaattaagctgtttatccaaaca 26479690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 86 - 164
Target Start/End: Complemental strand, 26820189 - 26820112
Alignment:
Q  86 aaaacagtttgattttattttatcttgcattatagaaataacgtatacataagtgcttaattaagttgcttatccaaac 164  Q
    |||| ||||||| |||||||||||||   ||||||||||||| ||||| |||| |||||||| ||||| ||||||||||    
T  26820189 aaaatagtttgactttattttatcttttgttatagaaataacttatac-taagcgcttaattgagttgtttatccaaac 26820112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 70 - 125
Target Start/End: Original strand, 33209283 - 33209339
Alignment:
Q  70 agcttatagatta-atgaaaacagtttgattttattttatcttgcattatagaaata 125  Q
    ||||||||| ||| |||||||||||| || ||||||||||||| |||||||||||||    
T  33209283 agcttatagtttatatgaaaacagttcgactttattttatctttcattatagaaata 33209339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 62 - 139
Target Start/End: Complemental strand, 12361207 - 12361129
Alignment:
Q  62 atgagaacagcttatagatta-atgaaaacagtttgattttattttatcttgcattatagaaataacgtatacataagt 139  Q
    |||| |||||||||||| ||| ||||||||| ||||| || ||||||||||   ||||||||||||| |||| ||||||    
T  12361207 atgaaaacagcttatagcttatatgaaaacaatttgacttcattttatctttatttatagaaataacttatatataagt 12361129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 89 - 138
Target Start/End: Original strand, 11119082 - 11119131
Alignment:
Q  89 acagtttgattttattttatcttgcattatagaaataacgtatacataag 138  Q
    ||||||||| |||||||||||||   ||||||||||| ||||||||||||    
T  11119082 acagtttgactttattttatcttttgttatagaaatatcgtatacataag 11119131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 117 - 165
Target Start/End: Complemental strand, 29097156 - 29097108
Alignment:
Q  117 atagaaataacgtatacataagtgcttaattaagttgcttatccaaaca 165  Q
    ||||||||| | ||||||||||| | ||||||||||| |||||||||||    
T  29097156 atagaaatagcttatacataagttcataattaagttgtttatccaaaca 29097108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 35; Significance: 0.0000000001; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 84 - 138
Target Start/End: Original strand, 33068639 - 33068693
Alignment:
Q  84 tgaaaacagtttgattttattttatcttgcattatagaaataacgtatacataag 138  Q
    ||||||||||||||| ||||||||||||   ||||||||||||| ||||||||||    
T  33068639 tgaaaacagtttgatattattttatcttttgttatagaaataacttatacataag 33068693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 62 - 111
Target Start/End: Original strand, 2027461 - 2027511
Alignment:
Q  62 atgagaacagcttatagatta-atgaaaacagtttgattttattttatctt 111  Q
    ||||||||||||||||| ||| ||||||| ||||||| |||||||||||||    
T  2027461 atgagaacagcttataggttatatgaaaatagtttgactttattttatctt 2027511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 134 - 172
Target Start/End: Original strand, 6963214 - 6963252
Alignment:
Q  134 ataagtgcttaattaagttgcttatccaaacaaggccta 172  Q
    |||||||||||||| ||||| ||||||||||||||||||    
T  6963214 ataagtgcttaatttagttgtttatccaaacaaggccta 6963252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 102 - 167
Target Start/End: Complemental strand, 34404382 - 34404317
Alignment:
Q  102 attttatcttgcattatagaaataacgtatacataagtgcttaattaagttgcttatccaaacaag 167  Q
    ||||||||| |  ||||||||||||   |||||||||  ||||||||||||| |||||||||||||    
T  34404382 attttatctcgtcttatagaaataagtcatacataagcacttaattaagttgtttatccaaacaag 34404317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 67 - 138
Target Start/End: Original strand, 10452420 - 10452492
Alignment:
Q  67 aacagcttatagatta-atgaaaacagtttgattttattttatcttgcattatagaaataacgtatacataag 138  Q
    |||| ||||||| ||| ||||||| |||||||||||||||||| ||   ||||||||||| | ||||||||||    
T  10452420 aacaacttatagcttatatgaaaatagtttgattttattttatattttgttatagaaatagcttatacataag 10452492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 85 - 137
Target Start/End: Original strand, 24836278 - 24836330
Alignment:
Q  85 gaaaacagtttgattttattttatcttgcattatagaaataacgtatacataa 137  Q
    ||||||| ||||| |||||||||||||   ||||||||||||| |||||||||    
T  24836278 gaaaacaatttgactttattttatcttttgttatagaaataacttatacataa 24836330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 85 - 137
Target Start/End: Original strand, 34429769 - 34429821
Alignment:
Q  85 gaaaacagtttgattttattttatcttgcattatagaaataacgtatacataa 137  Q
    |||||||||| || ||||||||||||   |||||||||||||| |||||||||    
T  34429769 gaaaacagttagactttattttatctcttattatagaaataacttatacataa 34429821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0024 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 62 - 138
Target Start/End: Complemental strand, 27591 - 27514
Alignment:
Q  62 atgagaacagcttatagatta-atgaaaacagtttgattttattttatcttgcattatagaaataacgtatacataag 138  Q
    |||| |||| ||||||| ||| ||||||||| ||||| |||||||||||||   ||||||||||||| ||||||||||    
T  27591 atgaaaacaacttatagtttatatgaaaacaatttgactttattttatcttctgttatagaaataacttatacataag 27514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 34; Significance: 0.0000000006; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 62 - 134
Target Start/End: Complemental strand, 49517085 - 49517012
Alignment:
Q  62 atgagaacagcttatagattaa-tgaaaacagtttgattttattttatcttgcattatagaaataacgtataca 134  Q
    |||| |||||||||||| |||| |||||||| ||||| |||||||||||||   ||||||||||||| ||||||    
T  49517085 atgaaaacagcttatagcttaaatgaaaacaatttgactttattttatcttttgttatagaaataacttataca 49517012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 134 - 170
Target Start/End: Original strand, 14737841 - 14737877
Alignment:
Q  134 ataagtgcttaattaagttgcttatccaaacaaggcc 170  Q
    ||||||||||||||||| |||||||||||||||||||    
T  14737841 ataagtgcttaattaagctgcttatccaaacaaggcc 14737877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 62 - 144
Target Start/End: Original strand, 33527202 - 33527285
Alignment:
Q  62 atgagaacagcttatagatta-atgaaaacagtttgattttattttatcttgcattatagaaataacgtatacataagtgctta 144  Q
    |||| |||||||||||||||| ||||||||||||||| | |||||||||||   || |||||||| | ||| |||||| |||||    
T  33527202 atgaaaacagcttatagattatatgaaaacagtttgactgtattttatcttttgttttagaaatagcttattcataagcgctta 33527285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 94 - 172
Target Start/End: Original strand, 3052771 - 3052849
Alignment:
Q  94 ttgattttattttatcttgcattatagaaataacgtatacataagtgcttaattaagttgcttatccaaacaaggccta 172  Q
    ||||||||||||||||||   ||||||||||| | || ||||||| ||||||||||| || |||| |||| | ||||||    
T  3052771 ttgattttattttatctttagttatagaaatagcttacacataagcgcttaattaagctgtttatacaaagagggccta 3052849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 83 - 137
Target Start/End: Complemental strand, 15360887 - 15360833
Alignment:
Q  83 atgaaaacagtttgattttattttatcttgcattatagaaataacgtatacataa 137  Q
    ||||||||||||||| |||||||||||||   |||||||||||||  ||||||||    
T  15360887 atgaaaacagtttgactttattttatcttttgttatagaaataactaatacataa 15360833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 119 - 172
Target Start/End: Original strand, 29929734 - 29929787
Alignment:
Q  119 agaaataacgtatacataagtgcttaattaagttgcttatccaaacaaggccta 172  Q
    |||||||| |||||||||||  |||||| |||||| ||||||||||| ||||||    
T  29929734 agaaataaagtatacataaggacttaatcaagttgtttatccaaacagggccta 29929787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 134 - 166
Target Start/End: Original strand, 48146173 - 48146205
Alignment:
Q  134 ataagtgcttaattaagttgcttatccaaacaa 166  Q
    |||||||||||||||||||| ||||||||||||    
T  48146173 ataagtgcttaattaagttgtttatccaaacaa 48146205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 62 - 137
Target Start/End: Original strand, 48830131 - 48830207
Alignment:
Q  62 atgagaacagcttatagatta-atgaaaacagtttgattttattttatcttgcattatagaaataacgtatacataa 137  Q
    |||| ||||| |||||| ||| ||||||| ||||||| |||||||||||||   | ||||||||||| |||||||||    
T  48830131 atgaaaacagtttatagcttatatgaaaatagtttgactttattttatctttggtaatagaaataacttatacataa 48830207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 33; Significance: 0.000000002; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 99 - 163
Target Start/End: Complemental strand, 25717479 - 25717415
Alignment:
Q  99 tttattttatcttgcattatagaaataacgtatacataagtgcttaattaagttgcttatccaaa 163  Q
    ||||||||||||| |||| |||||||||| ||||||||||  |||||| |||||| |||| ||||    
T  25717479 tttattttatctttcattctagaaataacttatacataagcacttaataaagttgtttattcaaa 25717415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 137 - 170
Target Start/End: Complemental strand, 52645600 - 52645567
Alignment:
Q  137 agtgcttaattaagttgcttatccaaacaaggcc 170  Q
    ||||||||||||||||| ||||||||||||||||    
T  52645600 agtgcttaattaagttgtttatccaaacaaggcc 52645567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 83 - 135
Target Start/End: Original strand, 31038944 - 31038996
Alignment:
Q  83 atgaaaacagtttgattttattttatcttgcattatagaaataacgtatacat 135  Q
    ||||||||| ||||| ||||||||||||   ||| ||||||||||||||||||    
T  31038944 atgaaaacaatttgactttattttatctattattgtagaaataacgtatacat 31038996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 137 - 165
Target Start/End: Original strand, 34375876 - 34375904
Alignment:
Q  137 agtgcttaattaagttgcttatccaaaca 165  Q
    |||||||||||||||||||||||||||||    
T  34375876 agtgcttaattaagttgcttatccaaaca 34375904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 32; Significance: 0.000000009; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 83 - 134
Target Start/End: Complemental strand, 5511558 - 5511507
Alignment:
Q  83 atgaaaacagtttgattttattttatcttgcattatagaaataacgtataca 134  Q
    ||||||| ||||||| |||||||||| || ||||||||||||||| ||||||    
T  5511558 atgaaaaaagtttgactttattttatatttcattatagaaataacttataca 5511507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 87 - 138
Target Start/End: Complemental strand, 27288622 - 27288571
Alignment:
Q  87 aaacagtttgattttattttatcttgcattatagaaataacgtatacataag 138  Q
    |||||||||||||||||||||||||  |||||||||| ||| | ||||||||    
T  27288622 aaacagtttgattttattttatcttttattatagaaacaacttttacataag 27288571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 86 - 138
Target Start/End: Complemental strand, 10143162 - 10143110
Alignment:
Q  86 aaaacagtttgattttattttatcttgcattatagaaataacgtatacataag 138  Q
    |||||||||||| || ||||||||||   ||||||||||||| ||||||||||    
T  10143162 aaaacagtttgacttaattttatcttttgttatagaaataacttatacataag 10143110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 31; Significance: 0.00000003; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 120 - 166
Target Start/End: Original strand, 39711507 - 39711553
Alignment:
Q  120 gaaataacgtatacataagtgcttaattaagttgcttatccaaacaa 166  Q
    |||||||| |||||||||| |||||||||||||| ||||| ||||||    
T  39711507 gaaataacttatacataagcgcttaattaagttgtttatcgaaacaa 39711553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 87 - 127
Target Start/End: Original strand, 425903 - 425943
Alignment:
Q  87 aaacagtttgattttattttatcttgcattatagaaataac 127  Q
    ||||||||||| |||||||||||||| ||||||||| ||||    
T  425903 aaacagtttgactttattttatcttgtattatagaattaac 425943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 133 - 165
Target Start/End: Original strand, 31691269 - 31691301
Alignment:
Q  133 cataagtgcttaattaagttgcttatccaaaca 165  Q
    ||||||||||||||||||||| |||||||||||    
T  31691269 cataagtgcttaattaagttgtttatccaaaca 31691301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University