View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12269_high_5 (Length: 330)

Name: NF12269_high_5
Description: NF12269
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12269_high_5
NF12269_high_5
[»] chr7 (1 HSPs)
chr7 (19-308)||(45961752-45962041)


Alignment Details
Target: chr7 (Bit Score: 278; Significance: 1e-155; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 278; E-Value: 1e-155
Query Start/End: Original strand, 19 - 308
Target Start/End: Complemental strand, 45962041 - 45961752
Alignment:
Q  19 gtgactattgcaacgacacatctcgatgtctgacaccaaccaacccaattgttacatacaatcacttgcatagaatagaaatagcctcacctcatagaca 118  Q
    |||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45962041 gtgactattgcatcgacacatatcgatgtctgacaccaaccaacccaattgttacatacaatcacttgcatagaatagaaatagcctcacctcatagaca 45961942  T
Q  119 ataacaaagttgtctttgatggaatcttcattcaatccgccaagataatcattgattacatcagctaccctacaaaggaactaaaaatgaatggttaaag 218  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45961941 ataacaaagttgtctttgatggaatcttcattcaatccgccaagataatcattgattacatcagctaccctacaaaggaactaaaaatgaatggttaaag 45961842  T
Q  219 gaaaaacataacattgactcatatgaattgcaaataatcgcataattattacctcaatggccatcaaaggtggcatttcaacttgagtac 308  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45961841 gaaaaacataacattgattcatatgaattgcaaataatcgcataattattacctcaatggccatcaaaggtggcatttcaacttgagtac 45961752  T

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