View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12269_low_1 (Length: 506)
Name: NF12269_low_1
Description: NF12269
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12269_low_1 |
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| [»] scaffold1543 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 381; Significance: 0; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 381; E-Value: 0
Query Start/End: Original strand, 18 - 489
Target Start/End: Complemental strand, 21624327 - 21623855
Alignment:
| Q |
18 |
tgttcagcaaccttgtccgaagaagtccttgtctaagaatataggacccaacagcggtatcctggttactttattcaagagaccaaatttggaaatcgga |
117 |
Q |
| |
|
||||||||| |||||||| ||||||||||||||||||||||||| || ||||| |||||||||||||| |||||||||||| || |||||||||||||| |
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|
| T |
21624327 |
tgttcagcagccttgtcctaagaagtccttgtctaagaatatagcacacaacaacggtatcctggttaatttattcaagaggccttatttggaaatcgga |
21624228 |
T |
|
| Q |
118 |
aattttgctttcatatgcgatcctttatcagatgattcacagtcgaaggcgattatgaaattcacttttggtggtattgacgaaagttacaaggagattt |
217 |
Q |
| |
|
||||||||||||||||| ||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
21624227 |
aattttgctttcatatgtgatcctttacacgatgatacacagtcgaaggcgattatgaaattcacttttggtggtattgacgaaagttacaaggagattt |
21624128 |
T |
|
| Q |
218 |
acactattttatcccttgaacagatggatcaaatgcaggaaatcactggaggagatgaaaataggttgtcatatttaacaaaaaacatcgggttgaagct |
317 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||| ||||||||| | ||||||||||| |
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| T |
21624127 |
acactattttatcccttgaacagatggatcaaatgcaggaaatcagtggaggagatgaaaataggttgttatatttgacaaaaaaccttgggttgaagct |
21624028 |
T |
|
| Q |
318 |
aatgggtttgagcgctttactcattgccggtaatgacgtaatagctagcgttgctgcctcccgaaaaggtagatcaaggaaccgaaaaattccccataat |
417 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21624027 |
aatgggtttgagcgctttactcattgccggtaatgacgtaatagctagcgttgctgcctcccgaaaaggtagatcaaggaaccgaaaaattccccataat |
21623928 |
T |
|
| Q |
418 |
ccaaagaagaaatagtttgcatataggggtgcttgttatccagttctgac-ttgaagtcttgtaatagaggat |
489 |
Q |
| |
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|||||||||||||| ||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
21623927 |
ccaaagaagaaataatttgcatatgggggtgcttgttatccagttctgactttgaagtcttgtaatagaggat |
21623855 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 351; E-Value: 0
Query Start/End: Original strand, 18 - 489
Target Start/End: Complemental strand, 21598171 - 21597697
Alignment:
| Q |
18 |
tgttcagcaaccttgtccgaagaagtccttgtctaagaatataggacccaacagcggtatcctggttactttattcaagagaccaaatttggaaatcgga |
117 |
Q |
| |
|
||||||||| |||||||| ||||||||||||||||||||||||| || ||||| |||||||||||||| |||||||||| | || ||||||||||| ||| |
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|
| T |
21598171 |
tgttcagcagccttgtcctaagaagtccttgtctaagaatatagcacacaacaacggtatcctggttaatttattcaagcggcctaatttggaaattgga |
21598072 |
T |
|
| Q |
118 |
aattttgctttcatatgcgatcctttatcagatgattcacagtcgaaggcgattatgaaattcacttttggtggtattgacgaaagttacaaggagattt |
217 |
Q |
| |
|
||||||||||||||||| ||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
21598071 |
aattttgctttcatatgtgatcctttacaagatgattcacaatcgaaggcgattatgaaattcacttttggtggtattgacgaaagttacaaggagattt |
21597972 |
T |
|
| Q |
218 |
acactattttatcccttgaacagatggatcaaatgcaggaaatcactggaggagatgaaaataggttgtcatatttaacaaaaaacatcgggttgaagct |
317 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||| ||||||||| ||||||||||||| |
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|
| T |
21597971 |
acactattttatcccttgaacagatggatcaaatgcaggaaatcaatggaggagatgaaaataggttgttatatttgacaaaaaacctcgggttgaagct |
21597872 |
T |
|
| Q |
318 |
aatgggtttgagcgctttactcattgccggtaatgacgtaatagctagcgttgctgcctcccgaaaaggtagatcaaggaacc----gaaaaattcccca |
413 |
Q |
| |
|
|||||||||||| |||||||||||||| |||||||| |||||||||||||||||||||||||| ||| ||||||||| ||||| ||||||||||||| |
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|
| T |
21597871 |
aatgggtttgagtgctttactcattgctggtaatgatgtaatagctagcgttgctgcctcccg-aaatgtagatcaaagaaccgaaagaaaaattcccca |
21597773 |
T |
|
| Q |
414 |
taatccaaagaagaaatagtttgcatataggggtgcttgttatccagttctgacttgaagtcttgtaatagaggat |
489 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||| |
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|
| T |
21597772 |
taatccaaagaagaaatagtttgcatatgggggtgcttgttatctagttctgacttgaagtcttgtaatagaggat |
21597697 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 215 - 489
Target Start/End: Complemental strand, 21645845 - 21645571
Alignment:
| Q |
215 |
tttacactattttatcccttgaacagatggatcaaatgcaggaaatcactggaggagatgaaaataggttgtcatatttaacaaaaaacatcgggttgaa |
314 |
Q |
| |
|
||||||||||||||||| |||||||| |||||| |||||||||||| |||||||||||||||| | |||||||||||| ||||||||| |||||||||| |
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|
| T |
21645845 |
tttacactattttatccattgaacaggtggatcgaatgcaggaaattactggaggagatgaaaccatgttgtcatatttgacaaaaaacctcgggttgaa |
21645746 |
T |
|
| Q |
315 |
gctaatgggtttgagcgctttactcattgccggtaatgacgtaatagctagcgttgctgcctcccgaaaaggtagatcaaggaaccgaaaaattccccat |
414 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
21645745 |
gctaatgggtttgagcgctttactcattgccggtaatgatgtaatagctagcgttgctgcctcccgaaaaggtagatcaaggaaccgaaaaattccccat |
21645646 |
T |
|
| Q |
415 |
aatccaaagaagaaatagtttgcatataggggtgcttgttatccagttctgacttgaagtcttgtaatagaggat |
489 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
21645645 |
aatccaaagaagaaatagtttgcatataggggtgcttgttatccagttctgacttgaagtcttgtaatagaggat |
21645571 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 160; E-Value: 5e-85
Query Start/End: Original strand, 12 - 215
Target Start/End: Complemental strand, 21646090 - 21645887
Alignment:
| Q |
12 |
aacctgtgttcagcaaccttgtccgaagaagtccttgtctaagaatataggacccaacagcggtatcctggttactttattcaagagaccaaatttggaa |
111 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||| |
|
|
| T |
21646090 |
aacctctgttcagcaaccttgtccgaagaagtccttgtctaagaatataggacccaacagcggtatcctggttaatttattcaagagacctaatttggaa |
21645991 |
T |
|
| Q |
112 |
atcggaaattttgctttcatatgcgatcctttatcagatgattcacagtcgaaggcgattatgaaattcacttttggtggtattgacgaaagttacaagg |
211 |
Q |
| |
|
||||||||||| ||||||||| |||||||||||||||||| |||||||||||||||||||| |||||||||||||||||| ||| ||||||||||||| |
|
|
| T |
21645990 |
ttcggaaatttttctttcatatctgatcctttatcagatgatccacagtcgaaggcgattatgcaattcacttttggtggtaatgaagaaagttacaagg |
21645891 |
T |
|
| Q |
212 |
agat |
215 |
Q |
| |
|
|||| |
|
|
| T |
21645890 |
agat |
21645887 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 105; Significance: 3e-52; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 215 - 482
Target Start/End: Complemental strand, 22768232 - 22767962
Alignment:
| Q |
215 |
tttacactattttatcccttgaacagatggatcaaatgcaggaaatcactggaggagatgaaaataggttgtcatatttaacaaaaaacatcgggttgaa |
314 |
Q |
| |
|
|||||||||||||||||| ||||||| |||||||| ||||| |||| || | ||||||||||||||||||||||||||| ||| ||||| | || ||||| |
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|
| T |
22768232 |
tttacactattttatcccgtgaacaggtggatcaagtgcagcaaattaccgaaggagatgaaaataggttgtcatatttgacagaaaacctaggtttgaa |
22768133 |
T |
|
| Q |
315 |
gctaatgggtttgagcgctttactcattgccggtaatgacgtaatagctagcgttgctgcctcccgaaaaggtagatcaaggaaccgaaaaatt------ |
408 |
Q |
| |
|
||||||||| || || |||||||||||||| ||||||||||||||||||||| |||||| |||||||||||| || |||||||||| |||| |
|
|
| T |
22768132 |
gctaatgggattaagtgctttactcattgctggtaatgacgtaatagctagcattgctggctcccgaaaaggaag---gaggaaccgaacaattacctcg |
22768036 |
T |
|
| Q |
409 |
---ccccataatccaaagaagaaatagtttgcatataggggtgcttgttatccagttctgacttgaagtcttgtaat |
482 |
Q |
| |
|
||| | | ||||||||| |||||||||||||||| ||| ||||||||||||||||||||| |||||||||| |
|
|
| T |
22768035 |
caacccggtgacccaaagaag---tagtttgcatatagggatgcgtgttatccagttctgacttgacgtcttgtaat |
22767962 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 12 - 213
Target Start/End: Complemental strand, 22768480 - 22768279
Alignment:
| Q |
12 |
aacctgtgttcagcaaccttgtccgaagaagtccttgtctaagaatataggacccaacagcggtatcctggttactttattcaagagaccaaatttggaa |
111 |
Q |
| |
|
|||| ||||||||||||||||||| ||||||||| |||| |||||||||||| ||| |||||||| |||||| |||||||||||| || |||||||| |
|
|
| T |
22768480 |
aacccgtgttcagcaaccttgtcctaagaagtccctgtccaagaatataggaaccagcagcggtactttggttaatttattcaagaggcctgatttggaa |
22768381 |
T |
|
| Q |
112 |
atcggaaattttgctttcatatgcgatcctttatcagatgattcacagtcgaaggcgattatgaaattcacttttggtggtattgacgaaagttacaagg |
211 |
Q |
| |
|
|| ||||| |||||||||| |||||||| ||||| ||| | |||||||| |||||| || || | || |||||||||| || ||||||||||||| |
|
|
| T |
22768380 |
tctgggaatttcgctttcatatatgatcctttctcagaagatccgcagtcgaaagcgattctgcaaatgacatttggtggtaccgaagaaagttacaagg |
22768281 |
T |
|
| Q |
212 |
ag |
213 |
Q |
| |
|
|| |
|
|
| T |
22768280 |
ag |
22768279 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1543 (Bit Score: 59; Significance: 9e-25; HSPs: 1)
Name: scaffold1543
Description:
Target: scaffold1543; HSP #1
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 18 - 96
Target Start/End: Complemental strand, 89 - 11
Alignment:
| Q |
18 |
tgttcagcaaccttgtccgaagaagtccttgtctaagaatataggacccaacagcggtatcctggttactttattcaag |
96 |
Q |
| |
|
||||||||| |||||||| ||||||||||||||||||||||||| || |||||||||||||||||||| |||||||||| |
|
|
| T |
89 |
tgttcagcagccttgtcctaagaagtccttgtctaagaatatagcacacaacagcggtatcctggttaatttattcaag |
11 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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