View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12269_low_10 (Length: 207)
Name: NF12269_low_10
Description: NF12269
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12269_low_10 |
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Alignment Details
Target: chr7 (Bit Score: 168; Significance: 3e-90; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 168; E-Value: 3e-90
Query Start/End: Original strand, 14 - 189
Target Start/End: Original strand, 31651701 - 31651876
Alignment:
| Q |
14 |
aagcaaaggggcatcccggataatcaaattcatctgaatcagctttcctcatacgctcgggatgaaactgcaatcccataataaacttaccctcttctgg |
113 |
Q |
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| T |
31651701 |
aagcaaaggggcatcccggataatcaaattcatctgaatcagctttcctcatccgctcgggatgaaactgcaatcccataataaacttaccctcttctgg |
31651800 |
T |
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| Q |
114 |
attataagcatcagggtcataaaacccttcaatcaaaccatcaggagcaaaagccattggaacaaaacgttgtgca |
189 |
Q |
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| T |
31651801 |
attataagcatcagggtcataaaacccttcaatcaaaccatcaggagcaaaagccattggaacaaaacgctgtgca |
31651876 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 111; Significance: 3e-56; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 111; E-Value: 3e-56
Query Start/End: Original strand, 22 - 188
Target Start/End: Complemental strand, 219497 - 219331
Alignment:
| Q |
22 |
gggcatcccggataatcaaattcatctgaatcagctttcctcatacgctcgggatgaaactgcaatcccataataaacttaccctcttctggattataag |
121 |
Q |
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| T |
219497 |
gggcatccagggtaatcaaaatcatctgaattaggttttctcatacgctcagggtgaaattgcaaacccataataaacttaccctcttctggattataag |
219398 |
T |
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| Q |
122 |
catcagggtcataaaacccttcaatcaaaccatcaggagcaaaagccattggaacaaaacgttgtgc |
188 |
Q |
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| T |
219397 |
cataagggtcataaaacccttcaattaaaccatcattagcaaaagccattggaacaaaacgttgtgc |
219331 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 58 - 179
Target Start/End: Complemental strand, 49630739 - 49630618
Alignment:
| Q |
58 |
ttcctcatacgctcgggatgaaactgcaatcccataataaacttaccctcttctggattataagcatcagggtcataaaacccttcaatcaaaccatcag |
157 |
Q |
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| T |
49630739 |
ttcctcattctctctggatgaaattgaaggcccataataaactttccctcttcaggattgtaattatttggattgtaaaatccttcaaccaaaccatctg |
49630640 |
T |
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| Q |
158 |
gagcaaaagccattggaacaaa |
179 |
Q |
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||||||| |||||||||||||| |
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| T |
49630639 |
gagcaaatgccattggaacaaa |
49630618 |
T |
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