View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12269_low_3 (Length: 418)

Name: NF12269_low_3
Description: NF12269
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12269_low_3
NF12269_low_3
[»] chr6 (4 HSPs)
chr6 (1-397)||(34249246-34249642)
chr6 (77-158)||(1094491-1094573)
chr6 (351-397)||(34240017-34240063)
chr6 (301-346)||(34239935-34239980)
[»] chr8 (7 HSPs)
chr8 (67-286)||(9229196-9229414)
chr8 (121-292)||(5861175-5861346)
chr8 (62-201)||(25358367-25358505)
chr8 (62-201)||(25391398-25391536)
chr8 (62-201)||(25678022-25678160)
chr8 (189-290)||(25129690-25129790)
chr8 (241-292)||(44300593-44300644)
[»] chr1 (2 HSPs)
chr1 (61-291)||(5716837-5717064)
chr1 (77-201)||(29360204-29360328)
[»] scaffold0009 (1 HSPs)
scaffold0009 (70-238)||(3193-3361)
[»] chr5 (2 HSPs)
chr5 (70-157)||(32743653-32743740)
chr5 (70-292)||(39777360-39777579)
[»] chr2 (1 HSPs)
chr2 (95-176)||(40709182-40709263)
[»] scaffold0466 (1 HSPs)
scaffold0466 (62-158)||(8334-8429)
[»] chr3 (1 HSPs)
chr3 (78-291)||(25079921-25080133)
[»] scaffold0360 (1 HSPs)
scaffold0360 (62-130)||(15187-15255)


Alignment Details
Target: chr6 (Bit Score: 340; Significance: 0; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 340; E-Value: 0
Query Start/End: Original strand, 1 - 397
Target Start/End: Original strand, 34249246 - 34249642
Alignment:
Q  1 atatcaagttcttgggtgactttattctactctattgagttcattggnnnnnnnattctgctctctattattttgggcattgtttatgaagctccatcgt 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||       ||||||||||||||||||||||||||||||||||||||||||||||    
T  34249246 atatcaagttcttgggtgactttattctactctattgagttcattggttttcttattctgctctctattattttgggcattgtttatgaagctccatcgt 34249345  T
Q  101 gtttgatctcgagtgcacgagttcagacatgcagttatgtaaactttgggaagcaaaattggataatgggttgcactggaggtccaccaaaaattttctt 200  Q
    |||||||||||||||||||||||||||||||||||||||||||  ||||| ||||||| ||||||||| ||||||||||||||||||| |||||||||||    
T  34249346 gtttgatctcgagtgcacgagttcagacatgcagttatgtaaatcttggggagcaaaactggataatgagttgcactggaggtccaccgaaaattttctt 34249445  T
Q  201 ttagagcaatggttttgaccagggcacaacaaaactcttctctatcattcctaactctctcaattctagttttctcttaatatttccaacaataggtaac 300  Q
    | ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34249446 tcagagcaatggttttgaccacggcacaacaaaactcttctctatcattcctaactctctcaattctagttttctcttaatatttccaacaataggtaac 34249545  T
Q  301 tgttatattaaatttgacattttttatttgaattgtaaatagattaattgtttttgacaaataaagattaaattatttgtataacattcgttacaaa 397  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  34249546 tgttatattaaatttgacattttttatttgaattgtaaatagattaattgtttttgacaaataaagattaaattatttgtataacattccttacaaa 34249642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 77 - 158
Target Start/End: Complemental strand, 1094573 - 1094491
Alignment:
Q  77 gcattgtttatgaagctccatcgtgttt-gatctcgagtgcacgagttcagacatgcagttatgtaaactttgggaagcaaaa 158  Q
    ||||||||| |||||||||||||||||  |  |||||||||||||||||| ||| |||||| ||||||| || || |||||||    
T  1094573 gcattgtttgtgaagctccatcgtgttcaggcctcgagtgcacgagttcacacacgcagttgtgtaaaccttagggagcaaaa 1094491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 351 - 397
Target Start/End: Original strand, 34240017 - 34240063
Alignment:
Q  351 tttttgacaaataaagattaaattatttgtataacattcgttacaaa 397  Q
    ||||||| |||||||||||| |||||||||||||||||| |||||||    
T  34240017 tttttgataaataaagattatattatttgtataacattccttacaaa 34240063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 301 - 346
Target Start/End: Original strand, 34239935 - 34239980
Alignment:
Q  301 tgttatattaaatttgacattttttatttgaattgtaaatagatta 346  Q
    ||||||||||| |||||||||||||||||||||| |||| ||||||    
T  34239935 tgttatattaattttgacattttttatttgaattataaaaagatta 34239980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 76; Significance: 5e-35; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 67 - 286
Target Start/End: Complemental strand, 9229414 - 9229196
Alignment:
Q  67 attattttgggcattgtttatgaagctccatcgtgtttgatctcgagtgcacgagttcagacatgcagttatgtaaactttgggaagcaaaattggataa 166  Q
    |||||| ||| |||||||| ||||||||||| |||||||  ||  |||||||||||||||||||||| || ||||||| ||||  |||||||  |||||     
T  9229414 attattctggacattgtttgtgaagctccattgtgtttgcccttaagtgcacgagttcagacatgcaattgtgtaaaccttggagagcaaaaccggatat 9229315  T
Q  167 tgggttgcactggaggtccaccaaaaattttcttttagagcaatggttttgaccagggcacaacaaaactcttctctatcattcctaactctctcaattc 266  Q
    |||||||||   |||||| | | |||||||||||| |||| | |||||||| ||| ||||||||||  ||||||| | |  |||||||||||||||||||    
T  9229314 tgggttgcatctgaggtctatcgaaaattttctttcagagtagtggttttggccacggcacaacaattctcttctatct-tttcctaactctctcaattc 9229216  T
Q  267 tagttttctcttaatatttc 286  Q
    |||||  |||||||||||||    
T  9229215 tagttcactcttaatatttc 9229196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 121 - 292
Target Start/End: Original strand, 5861175 - 5861346
Alignment:
Q  121 gttcagacatgcagttatgtaaactttgggaagcaaaattggataatgggttgcactggaggtccaccaaaaattttcttttagagcaatggttttgacc 220  Q
    |||||||||  ||||| |||||| |||| |||||||||| ||||| |  ||||||    ||||||||| ||||||| |||| |||||| | |||||||||    
T  5861175 gttcagacacacagttgtgtaaattttgagaagcaaaatcggatattaagttgcatcaaaggtccaccgaaaatttgctttcagagcagtagttttgacc 5861274  T
Q  221 agggcacaacaaaactcttctctatcattcctaactctctcaattctagttttctcttaatatttccaacaa 292  Q
    | ||||||||||||||||| ||||||||| |||||| ||  ||||||| ||| || ||||| ||||||||||    
T  5861275 acggcacaacaaaactcttttctatcatttctaactatccaaattctaatttacttttaatgtttccaacaa 5861346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 62 - 201
Target Start/End: Original strand, 25358367 - 25358505
Alignment:
Q  62 tctctattattttgggcattgtttatgaagctccatcgtgtttgatctcgagtgcacgagttcagacatgcagttatgtaaactttgggaagcaaaattg 161  Q
    |||| ||||||||||||||||||||||||||||||  ||| | | ||||||||||||||||||||| |   |||| ||||||| ||||| |||||||  |    
T  25358367 tctcgattattttgggcattgtttatgaagctccaaagtgctgg-tctcgagtgcacgagttcagatacatagttgtgtaaaccttggggagcaaaaccg 25358465  T
Q  162 gataatgggttgcactggaggtccaccaaaaattttcttt 201  Q
    |||| ||| |||||| ||||||||||| ||||||| ||||    
T  25358466 gatattggattgcaccggaggtccaccgaaaatttgcttt 25358505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 62 - 201
Target Start/End: Original strand, 25391398 - 25391536
Alignment:
Q  62 tctctattattttgggcattgtttatgaagctccatcgtgtttgatctcgagtgcacgagttcagacatgcagttatgtaaactttgggaagcaaaattg 161  Q
    |||| ||||||||||||||||||||||||||||||  ||| | |  |||||||||||||||||||| |   |||| ||||||| ||||| |||||||  |    
T  25391398 tctcgattattttgggcattgtttatgaagctccaaagtgctggc-ctcgagtgcacgagttcagatacatagttgtgtaaaccttggggagcaaaaccg 25391496  T
Q  162 gataatgggttgcactggaggtccaccaaaaattttcttt 201  Q
    |||| ||| |||||| ||||||||||| ||||||| ||||    
T  25391497 gatattggattgcaccggaggtccaccgaaaatttgcttt 25391536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 62 - 201
Target Start/End: Original strand, 25678022 - 25678160
Alignment:
Q  62 tctctattattttgggcattgtttatgaagctccatcgtgtttgatctcgagtgcacgagttcagacatgcagttatgtaaactttgggaagcaaaattg 161  Q
    |||| ||||||||||||||||||| |||||||||| | || | |  |||||||||||||||||||| | | |||| ||||||| |||| ||||||||  |    
T  25678022 tctcaattattttgggcattgtttgtgaagctccaacatgctggc-ctcgagtgcacgagttcagatacgtagttgtgtaaaccttggaaagcaaaaccg 25678120  T
Q  162 gataatgggttgcactggaggtccaccaaaaattttcttt 201  Q
    |||| ||| |||||| ||||||||||| ||||||| ||||    
T  25678121 gatattggattgcaccggaggtccaccgaaaatttgcttt 25678160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 189 - 290
Target Start/End: Original strand, 25129690 - 25129790
Alignment:
Q  189 aaaaattttcttttagagcaatggttttgaccagggcacaacaaaactcttctctatcattcctaactctctcaattctagttttctcttaatatttcca 288  Q
    |||| ||||||||||| ||| |||||||| ||| ||||||||| ||||||  || ||| ||||||||| ||||||||||| ||| |||||||||||||||    
T  25129690 aaaatttttcttttag-gcagtggttttgtccacggcacaacataactctcttcgatctttcctaactatctcaattctattttactcttaatatttcca 25129788  T
Q  289 ac 290  Q
    ||    
T  25129789 ac 25129790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 241 - 292
Target Start/End: Original strand, 44300593 - 44300644
Alignment:
Q  241 tctatcattcctaactctctcaattctagttttctcttaatatttccaacaa 292  Q
    |||||| ||||||||| ||||||||||| ||| |||||||||||||||||||    
T  44300593 tctatctttcctaactatctcaattctattttactcttaatatttccaacaa 44300644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 76; Significance: 5e-35; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 61 - 291
Target Start/End: Original strand, 5716837 - 5717064
Alignment:
Q  61 ctctctattattttgggcattgtttatgaagctccatcgtgtttgatctcgagtgcacgagttcagacatgcagttatgtaaactttgggaagcaaaatt 160  Q
    ||||| |||||| |||||||| ||| |||||||||||||| |||||  ||||||| | ||||| ||||| |||||| |||||| |||||| ||||||||     
T  5716837 ctctcaattattatgggcattatttgtgaagctccatcgtttttgacttcgagtggatgagtttagacacgcagttgtgtaaattttggggagcaaaatc 5716936  T
Q  161 ggataatgggttgcactggaggtccaccaaaaattttcttttagagcaatggttttgaccagggcacaacaaaactcttctctatcattcctaactctct 260  Q
    |||   |||||||||| ||| || ||||  |||||| | || || ||| ||||||| |||| ||||||||  ||||||  |||||| |||||||||||||    
T  5716937 gga-cttgggttgcaccggaagtacaccggaaatttgcattcagggcagtggtttttaccacggcacaac--aactctcttctatctttcctaactctct 5717033  T
Q  261 caattctagttttctcttaatatttccaaca 291  Q
     ||||||||||| ||||||||||||||||||    
T  5717034 aaattctagtttactcttaatatttccaaca 5717064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 77 - 201
Target Start/End: Original strand, 29360204 - 29360328
Alignment:
Q  77 gcattgtttatgaagctccatcgtgtttgatctcgagtgcacgagttcagacatgcagttatgtaaactttgggaagcaaaattggataatgggttgcac 176  Q
    |||||||||||||||||||||||||||||  ||| ||||||||| |||||||| |||||| ||||||| ||| | |||||||| ||||| ||||||||||    
T  29360204 gcattgtttatgaagctccatcgtgtttggcctcaagtgcacgaattcagacacgcagttgtgtaaaccttgaggagcaaaatcggatattgggttgcac 29360303  T
Q  177 tggaggtccaccaaaaattttcttt 201  Q
     ||||||||||| ||||||| ||||    
T  29360304 cggaggtccaccgaaaatttgcttt 29360328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0009 (Bit Score: 57; Significance: 1e-23; HSPs: 1)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 70 - 238
Target Start/End: Complemental strand, 3361 - 3193
Alignment:
Q  70 attttgggcattgtttatgaagctccatcgtgtttgatctcgagtgcacgagttcagacatgcagttatgtaaactttgggaagcaaaattggataatgg 169  Q
    ||||||| |||| ||| |||||||||||||||||||| |||||||||||| ||||||||| | | || | ||||| ||| | || ||||| ||||| ||     
T  3361 attttggacattatttgtgaagctccatcgtgtttgacctcgagtgcacgggttcagacacgaaattgtataaaccttgaggagtaaaatcggatattga 3262  T
Q  170 gttgcactggaggtccaccaaaaattttcttttagagcaatggttttgaccagggcacaacaaaactct 238  Q
     |||||| |||| | |||||||||||| |||| || | || ||||||| ||| ||||||||||||||||    
T  3261 attgcaccggagtttcaccaaaaatttgctttcagggtaaaggttttggccacggcacaacaaaactct 3193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 48; Significance: 3e-18; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 70 - 157
Target Start/End: Complemental strand, 32743740 - 32743653
Alignment:
Q  70 attttgggcattgtttatgaagctccatcgtgtttgatctcgagtgcacgagttcagacatgcagttatgtaaactttgggaagcaaa 157  Q
    |||||||| ||||||| |||||||||||||||||||  ||| |||||| ||||||||||| |||||| ||||||| ||||| ||||||    
T  32743740 attttgggtattgtttgtgaagctccatcgtgtttggcctcaagtgcatgagttcagacaagcagttgtgtaaaccttggggagcaaa 32743653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 70 - 292
Target Start/End: Original strand, 39777360 - 39777579
Alignment:
Q  70 attttgggcattgtttatgaagctccatcgtgtt-tgatctcgagtgcacgagttcagacatgcagttatgtaaactttgggaagcaaaattggataatg 168  Q
    |||||||||||||||  |||||||||||||||||  || ||||||||||   ||||| ||| |||||| ||||||||||||| |||||||  ||||  ||    
T  39777360 attttgggcattgttattgaagctccatcgtgttcagacctcgagtgcataggttcaaacacgcagttgtgtaaactttggggagcaaaaccggat-ctg 39777458  T
Q  169 ggttgcactggaggtccaccaaaaattttcttttagagcaatggttttgaccagggcacaacaaaactcttctctatcattcctaactctctcaattcta 268  Q
    ||||| || ||||||||||| ||||||  || | |  |||||||||||   || ||||||||||  ||||  |||||| |||||| || ||  || ||||    
T  39777459 ggttgtaccggaggtccaccgaaaattcgctctcaaggcaatggtttttgtcatggcacaacaattctct--tctatctttcctagctatccaaaatcta 39777556  T
Q  269 gttttctcttaatatttccaacaa 292  Q
      ||||||||||||||||||||||    
T  39777557 -atttctcttaatatttccaacaa 39777579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 46; Significance: 4e-17; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 95 - 176
Target Start/End: Original strand, 40709182 - 40709263
Alignment:
Q  95 catcgtgtttgatctcgagtgcacgagttcagacatgcagttatgtaaactttgggaagcaaaattggataatgggttgcac 176  Q
    |||||||||||  |||||||||| | ||||||||||||||| |||||||||||||| |||||||  ||||| ||||||||||    
T  40709182 catcgtgtttggcctcgagtgcatgggttcagacatgcagtaatgtaaactttggggagcaaaaccggatattgggttgcac 40709263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0466 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: scaffold0466
Description:

Target: scaffold0466; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 62 - 158
Target Start/End: Complemental strand, 8429 - 8334
Alignment:
Q  62 tctctattattttgggcattgtttatgaagctccatcgtgtttgatctcgagtgcacgagttcagacatgcagttatgtaaactttgggaagcaaaa 158  Q
    |||| ||||||||||| ||||||| |||||||||| |||| | |  ||| |||||||||||||||||| | |||| ||||||| ||||| |||||||    
T  8429 tctcaattattttgggtattgtttgtgaagctccaacgtgctagc-ctcaagtgcacgagttcagacacgtagttgtgtaaacattggggagcaaaa 8334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 78 - 291
Target Start/End: Complemental strand, 25080133 - 25079921
Alignment:
Q  78 cattgtttatgaagctccatcgtgtttgatctcgagtgcacgagttcagacatgcagttatgtaaactttgggaagcaaaatt-ggataatgggttgcac 176  Q
    |||||||| ||||||||| | || |||  |||||||||||||||||||||||  || || ||||||| ||  | || ||||   || || ||||||||||    
T  25080133 cattgtttgtgaagctcccttgtattttgtctcgagtgcacgagttcagacacacaattgtgtaaaccttacggagaaaaacccgggtattgggttgcac 25080034  T
Q  177 tggaggtccaccaaaaattttcttttagagcaatggttttgaccagggcacaacaaaactcttctctatcattcctaactctctcaattctagttttctc 276  Q
     ||||||||| |  |||||| |||| |||||| ||| |||  |||  |||||||||| ||||| |  || |||||||||| ||||||||||| |||  |     
T  25080033 cggaggtccagcggaaatttgctttcagagcagtggcttttgccactgcacaacaaatctctttt--attattcctaactatctcaattctattttaatt 25079936  T
Q  277 ttaatatttccaaca 291  Q
     ||||||||||||||    
T  25079935 gtaatatttccaaca 25079921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0360 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0360
Description:

Target: scaffold0360; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 62 - 130
Target Start/End: Original strand, 15187 - 15255
Alignment:
Q  62 tctctattattttgggcattgtttatgaagctccatcgtgtttgatctcgagtgcacgagttcagacat 130  Q
    |||| ||||||||||  ||||||| ||||||| | || |||||| ||||||||||| ||||| ||||||    
T  15187 tctcaattattttggatattgtttgtgaagcttcgtcatgtttggtctcgagtgcatgagtttagacat 15255  T

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