View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12269_low_5 (Length: 335)
Name: NF12269_low_5
Description: NF12269
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12269_low_5 |
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Alignment Details
Target: chr4 (Bit Score: 295; Significance: 1e-166; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 295; E-Value: 1e-166
Query Start/End: Original strand, 18 - 320
Target Start/End: Complemental strand, 35044735 - 35044433
Alignment:
| Q |
18 |
agttccagcatcacgaccatcaatttcttgatcatcaacagtggagataataacatccataaagtcacgttcatttccaggaaccctactacgtttgtgt |
117 |
Q |
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| T |
35044735 |
agttccagcatcacgaccatcaatttcttgatcatcaacagcggagataataacatccataaagtcacgttcatttccaggaaccctactacgtttgtgt |
35044636 |
T |
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| Q |
118 |
tgatcaatccaaccttgaacaaactcatccaactctttagcagttttcttcatttccttctcttttccatccaaatccaaccatcttaaaaacggcaacg |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35044635 |
tgatcaatccaaccttgaacaaactcatccaactctttagcagttttcttcatttccttctcttttccatccaaatccaaccatcttaaaaacggcaacg |
35044536 |
T |
|
| Q |
218 |
aatcagatataacaaaggaaccacaaagatggaagagctccctaaacgcttttcgtatttgtttgttcttttctccttccccgtcaaaacgttctccaac |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35044535 |
aatcagatataacaaaggaaccacaaagatggaagagctctctaaacgcttttcgtatttgtttgttcttttctccttccccgtcaaaacgttctccaac |
35044436 |
T |
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| Q |
318 |
cac |
320 |
Q |
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||| |
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| T |
35044435 |
cac |
35044433 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 109 - 239
Target Start/End: Complemental strand, 35036513 - 35036383
Alignment:
| Q |
109 |
cgtttgtgttgatcaatccaaccttgaacaaactcatccaactctttagcagttttcttcatttccttctcttttccatccaaatccaaccatcttaaaa |
208 |
Q |
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|||||||||||||| | |||| |||||||||| ||||| ||||||||||| ||||||||||| | ||||| |||||||||||||||||||||||| |||| |
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| T |
35036513 |
cgtttgtgttgatcgagccaaacttgaacaaaatcatctaactctttagccgttttcttcatctgcttctgttttccatccaaatccaaccatctaaaaa |
35036414 |
T |
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| Q |
209 |
acggcaacgaatcagatataacaaaggaacc |
239 |
Q |
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| T |
35036413 |
accgcaacatgtcagatataacaaatgaacc |
35036383 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 110 - 247
Target Start/End: Complemental strand, 35020313 - 35020176
Alignment:
| Q |
110 |
gtttgtgttgatcaatccaaccttgaacaaactcatccaactctttagcagttttcttcatttccttctcttttccatccaaatccaaccatcttaaaaa |
209 |
Q |
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||||||| ||||||| |||| | |||||| ||||| |||||||| || ||||||||||||| ||||| |||||||||||||||||||||||| ||| | |
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| T |
35020313 |
gtttgtgctgatcaagccaaacacaaacaaagtcatctaactcttttgctgttttcttcatttgcttctgttttccatccaaatccaaccatctcaaata |
35020214 |
T |
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| Q |
210 |
cggcaacgaatcagatataacaaaggaaccacaaagat |
247 |
Q |
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||| ||| ||||| | |||||| ||||||| ||||| |
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| T |
35020213 |
cggtaacatgtcagaaacaacaaatgaaccactaagat |
35020176 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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