View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12270_high_1 (Length: 426)

Name: NF12270_high_1
Description: NF12270
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12270_high_1
NF12270_high_1
[»] chr3 (31 HSPs)
chr3 (19-412)||(5296363-5296756)
chr3 (22-359)||(6256873-6257210)
chr3 (22-200)||(5261768-5261946)
chr3 (22-359)||(13275425-13275762)
chr3 (22-328)||(6139988-6140294)
chr3 (22-360)||(6242987-6243325)
chr3 (22-104)||(6724100-6724182)
chr3 (22-359)||(6914772-6915109)
chr3 (22-355)||(6593374-6593707)
chr3 (22-197)||(5278498-5278673)
chr3 (22-104)||(4390934-4391016)
chr3 (22-104)||(6880442-6880524)
chr3 (232-355)||(6235722-6235845)
chr3 (22-101)||(6898017-6898096)
chr3 (22-104)||(6482004-6482086)
chr3 (231-329)||(6897789-6897887)
chr3 (145-359)||(8571093-8571307)
chr3 (238-358)||(4391150-4391270)
chr3 (24-127)||(8587829-8587932)
chr3 (22-104)||(6263608-6263690)
chr3 (229-327)||(6724307-6724405)
chr3 (22-124)||(6945177-6945279)
chr3 (22-104)||(7747928-7748010)
chr3 (229-355)||(6880191-6880317)
chr3 (22-104)||(7585800-7585882)
chr3 (22-125)||(5265987-5266090)
chr3 (229-272)||(8587684-8587727)
chr3 (22-104)||(6235973-6236055)
chr3 (22-104)||(6782350-6782432)
chr3 (22-124)||(6841589-6841691)
chr3 (22-104)||(8469489-8469571)
[»] scaffold0425 (1 HSPs)
scaffold0425 (22-70)||(13555-13603)
[»] chr7 (1 HSPs)
chr7 (147-199)||(6575469-6575521)


Alignment Details
Target: chr3 (Bit Score: 302; Significance: 1e-170; HSPs: 31)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 302; E-Value: 1e-170
Query Start/End: Original strand, 19 - 412
Target Start/End: Complemental strand, 5296756 - 5296363
Alignment:
Q  19 agaagtggggtttgttccaactcaattctctgaaagaattcattgttagtgacgactttgaaaacatagagtcctttccggaggagtactttcttccacc 118  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||| || |||||||||||||| ||||| || |||||||||   || |||||||     
T  5296756 agaagtgggggttgttccaactcaattctctgaaagaattcattgttagcgatgactttgaaaacatggagtcattcccggaggagagtttgcttccact 5296657  T
Q  119 aactcttgaccatctcgagttgagatattgttcaaagctacagataatgaattacaagggtcttcttcatctcaaatctctccaatccttacatatcgat 218  Q
     |||||||||||||||||||||||||||||||||||||||   ||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||    
T  5296656 gactcttgaccatctcgagttgagatattgttcaaagctaagaataatgaattacaagggccttcttcatctcaaatctctccaatccttacatattgat 5296557  T
Q  219 ggttgccttggtcttgagtgcttgcctgaggagtgtctacccaactccctttctgtattgtccattaataactgtccgttacttaagcagcggtaccaaa 318  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||| |||||||||| ||||||||||    
T  5296556 ggttgccttggtcttgagtgcttgcctgaggagtgtctacccaactccctttctattttgtccattaataactgtccgatacttaagcaacggtaccaaa 5296457  T
Q  319 aggaggaaggaaaacattggcataaaatctgtcacatccctattgtgaggataacttgactgataattagcagatgaaaatggtatagatcaca 412  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  5296456 aggaggaaggaaaacattggcataaaatttgtcacatccctattgtgaggatagcttgactgataattagcagatgaaaatggtatagatcaca 5296363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 22 - 359
Target Start/End: Complemental strand, 6257210 - 6256873
Alignment:
Q  22 agtggggtttgttccaactcaattctctgaaagaattcattgttagtgacgactttgaaaacatagagtcctttccggaggagtactttcttccaccaac 121  Q
    |||||||||||||||||||||| ||||||||| |||||| | |||||||||| ||||||| | | || |||||||| ||||||    | || ||| ||||    
T  6257210 agtggggtttgttccaactcaaatctctgaaacaattcactcttagtgacgattttgaaatcttcgaatcctttccagaggagagtatgctgccatcaac 6257111  T
Q  122 tcttgaccatctcgagttgagatattgttcaaagctacagataatgaattacaagggtcttcttcatctcaaatctctccaatccttacatatcgatggt 221  Q
    | || ||  ||| ||||||| | |||||||||| |||   | ||| || |||||||||||||| || ||||  || ||  ||||  || |||| || | |    
T  6257110 tattaactctcttgagttgacaaattgttcaaacctaacaaaaataaactacaagggtcttctccacctcacttcacttgaatctctatatattgaagat 6257011  T
Q  222 tgccttggtcttgagtgcttgcctgaggagtgtctacccaactccctttctgtattgtccattaataactgtccgttacttaagcagcggtaccaaaagg 321  Q
    || | | |||||||  ||||||| |||||| ||||||||| ||||||||||   ||||| ||| || | ||||| ||| ||||||||| |||||||||||    
T  6257010 tgtccttgtcttgatagcttgccagaggagggtctacccagctccctttctactttgtcgattcatgattgtccattaattaagcagctgtaccaaaagg 6256911  T
Q  322 aggaaggaaaacattggcataaaatctgtcacatccct 359  Q
    || ||||  | |||||||||| ||| | ||||||||||    
T  6256910 agcaaggcgagcattggcatacaatttctcacatccct 6256873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 22 - 200
Target Start/End: Complemental strand, 5261946 - 5261768
Alignment:
Q  22 agtggggtttgttccaactcaattctctgaaagaattcattgttagtgacgactttgaaaacatagagtcctttccggaggagtactttcttccaccaac 121  Q
    |||||||||||||| ||||||||||||||||||||||||  ||||||||||||||||| ||  | ||||| || ||||||||| |  | || ||||||||    
T  5261946 agtggggtttgttcgaactcaattctctgaaagaattcaaagttagtgacgactttgagaatgtggagtctttcccggaggagaatctactgccaccaac 5261847  T
Q  122 tcttgaccatctcgagttgagatattgttcaaagctacagataatgaattacaagggtcttcttcatctcaaatctctc 200  Q
    |||| |   |||    |||  | ||||||||||||||   ||||| || ||||||||||||||| ||||||||||||||    
T  5261846 tcttaagtctcttcgtttggaaaattgttcaaagctaagaataataaactacaagggtcttcttaatctcaaatctctc 5261768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 22 - 359
Target Start/End: Original strand, 13275425 - 13275762
Alignment:
Q  22 agtggggtttgttccaactcaattctctgaaagaattcattgttagtgacgactttgaaaacatagagtcctttccggaggagtactttcttccaccaac 121  Q
    |||||||||||||| ||||||| ||||||||| |||||| | ||||||| || ||||||| | | ||||||||||| || |||    | || ||| ||||    
T  13275425 agtggggtttgttcaaactcaaatctctgaaacaattcagtcttagtgatgattttgaaatctttgagtcctttccagaagagagtatgctgccatcaac 13275524  T
Q  122 tcttgaccatctcgagttgagatattgttcaaagctacagataatgaattacaagggtcttcttcatctcaaatctctccaatccttacatatcgatggt 221  Q
    | || ||  ||| ||||||| | |||||||||| |||   | ||| || |||||||||||||| || ||||  || ||  ||||  || |||| || | |    
T  13275525 tattaactctcttgagttgacaaattgttcaaacctaagaaaaataaactacaagggtcttctccacctcacttcacttgaatctctatatattgaagat 13275624  T
Q  222 tgccttggtcttgagtgcttgcctgaggagtgtctacccaactccctttctgtattgtccattaataactgtccgttacttaagcagcggtaccaaaagg 321  Q
    |||| | |||||||| ||||||| |||||| |||||||||  |||||||||   ||||||||| || | ||||| ||| ||||||||  |||||||||||    
T  13275625 tgcccttgtcttgagagcttgccagaggagggtctacccagttccctttctactttgtccattcatgattgtccattaattaagcagttgtaccaaaagg 13275724  T
Q  322 aggaaggaaaacattggcataaaatctgtcacatccct 359  Q
    || |||| || | |||||||| ||| | ||| ||||||    
T  13275725 agcaaggcaagcgttggcatacaatttctcatatccct 13275762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 22 - 328
Target Start/End: Complemental strand, 6140294 - 6139988
Alignment:
Q  22 agtggggtttgttccaactcaattctctgaaagaattcattgttagtgacgactttgaaaacatagagtcctttccggaggagtactttcttccaccaac 121  Q
    |||||||||||||| ||||||| ||||||||| |||||| | ||||||| || ||||||| | | || |||||||| ||||||    | || ||| ||||    
T  6140294 agtggggtttgttcaaactcaaatctctgaaacaattcagtcttagtgatgattttgaaatcttggaatcctttccagaggagagtctgctgccatcaac 6140195  T
Q  122 tcttgaccatctcgagttgagatattgttcaaagctacagataatgaattacaagggtcttcttcatctcaaatctctccaatccttacatatcgatggt 221  Q
    | || ||  ||| ||||||| | |||||||||| ||| | | ||| || |||||||||||||| || ||||  || ||  ||||  || |||| || | |    
T  6140194 tattaactctcttgagttgacaaattgttcaaacctaaaaaaaataaactacaagggtcttctccacctcacttcacttgaatctctatatattgaagat 6140095  T
Q  222 tgccttggtcttgagtgcttgcctgaggagtgtctacccaactccctttctgtattgtccattaataactgtccgttacttaagcagcggtaccaaaagg 321  Q
    |||| | |||||||| ||||||| |||||| |||||||||  |||||||||   ||||||||| || | ||||| ||| | ||||||  |||||||||||    
T  6140094 tgcccttgtcttgagagcttgccagaggagggtctacccagttccctttctactttgtccattcatgattgtccattaatcaagcagttgtaccaaaagg 6139995  T
Q  322 aggaagg 328  Q
    || ||||    
T  6139994 agcaagg 6139988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 22 - 360
Target Start/End: Complemental strand, 6243325 - 6242987
Alignment:
Q  22 agtggggtttgttccaactcaattctctgaaagaattcattgttagtgacgactttgaaaacatagagtcctttccggaggagtactttcttccaccaac 121  Q
    |||||||||||||||||||||| ||||||||| |||||| | ||||||| || ||||||| | | ||||||||||| ||||||    | || ||| |||     
T  6243325 agtggggtttgttccaactcaaatctctgaaacaattcagtcttagtgatgattttgaaatcttcgagtcctttccagaggagagtatgctgccatcaag 6243226  T
Q  122 tcttgaccatctcgagttgagatattgttcaaagctacagataatgaattacaagggtcttcttcatctcaaatctctccaatccttacatatcgatggt 221  Q
    | || ||  ||| || |||| | |||||||    ||| | | ||| || | |||||||||||| || ||||  || ||  ||||  || |||| || | |    
T  6243225 tattaactctcttgatttgaaaaattgttcctgcctaaaaaaaataaactgcaagggtcttctccacctcacttcacttgaatctctatatattgaagat 6243126  T
Q  222 tgccttggtcttgagtgcttgcctgaggagtgtctacccaactccctttctgtattgtccattaataactgtccgttacttaagcagcggtaccaaaagg 321  Q
    |||| | |||||||| ||||||| |||||| ||||||| | ||| ||||||   ||||| ||| || ||||||| ||||||||||||  |||||||||||    
T  6243125 tgcccttgtcttgagagcttgccagaggagggtctacctatctctctttctactttgtcaattcatgactgtccattacttaagcagttgtaccaaaagg 6243026  T
Q  322 aggaaggaaaacattggcataaaatctgtcacatcccta 360  Q
    || ||||| | | |||||||| ||| |||||||||||||    
T  6243025 agcaaggagagcgttggcatacaatttgtcacatcccta 6242987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 22 - 104
Target Start/End: Original strand, 6724100 - 6724182
Alignment:
Q  22 agtggggtttgttccaactcaattctctgaaagaattcattgttagtgacgactttgaaaacatagagtcctttccggaggag 104  Q
    |||||||||||||||||||| ||||||||||| |||||| ||||||||| || ||| ||| | ||||||||||||||||||||    
T  6724100 agtggggtttgttccaactcgattctctgaaacaattcagtgttagtgatgattttcaaatcttagagtcctttccggaggag 6724182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 22 - 359
Target Start/End: Complemental strand, 6915109 - 6914772
Alignment:
Q  22 agtggggtttgttccaactcaattctctgaaagaattcattgttagtgacgactttgaaaa-catagagtcctttccggaggagtactttcttccaccaa 120  Q
    |||||||||||||||||||||||||||| ||| ||||   ||||||||| || |||||| | | | ||||||||||| ||||||    | || ||| |||    
T  6915109 agtggggtttgttccaactcaattctctaaaacaattatgtgttagtgatga-tttgaatatcttggagtcctttccagaggagagtctgctgccatcaa 6915011  T
Q  121 ctcttgaccatctcgagttgagatattgttcaaagctacagataatgaattacaagggtcttcttcatctcaaatctctccaatccttacatatcgatgg 220  Q
    || || |   ||||||||||| | ||||||| || ||| | ||||| || |||||||||||||| || ||||  || ||  ||||  || |||| || |     
T  6915010 ctattaaatctctcgagttgacaaattgttccaacctaaaaataataaactacaagggtcttctccacctcacttcgcttgaatctctatatattgaaga 6914911  T
Q  221 ttgccttggtcttgagtgcttgcctgaggagtgtctacccaactccctttctgtattgtccattaataactgtccgttacttaagcagcggtaccaaaag 320  Q
    ||||| | |||||||  ||||||| ||||||  |||||||| ||||||||||   ||||||||| || ||||||| ||||||||| |   |||||||| |    
T  6914910 ttgcccttgtcttgaacgcttgccggaggaggatctacccagctccctttctactttgtccattcatgactgtccattacttaagaaattgtaccaaatg 6914811  T
Q  321 gaggaaggaaaacattggcataaaatctgtcacatccct 359  Q
    ||| ||||| | | |||||||| ||| ||||||||||||    
T  6914810 gagcaaggagagcgttggcatagaatttgtcacatccct 6914772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 22 - 355
Target Start/End: Original strand, 6593374 - 6593707
Alignment:
Q  22 agtggggtttgttccaactcaattctctgaaagaattcattgttagtgacgactttgaaaacatagagtcctttccggaggagtactttcttccaccaac 121  Q
    |||||||||||||||||||| ||||||||||| |||||| ||||||||| || ||| ||| | | ||||||||||||||||||    | |||||| ||||    
T  6593374 agtggggtttgttccaactcgattctctgaaacaattcagtgttagtgatgattttcaaatcttggagtcctttccggaggagagtctgcttccatcaac 6593473  T
Q  122 tcttgaccatctcgagttgagatattgttcaaagctacagataatgaattacaagggtcttcttcatctcaaatctctccaatccttacatatcgatggt 221  Q
    | || |     | ||||| | | ||||||| || |||   | ||| || |||||||||||||| || ||||  || ||  ||||  ||  ||| || |      
T  6593474 tattaaatcctttgagttaacaaattgttccaacctaagaaaaataaactacaagggtcttctccacctcacttcacttgaatctctatgtattgaagac 6593573  T
Q  222 tgccttggtcttgagtgcttgcctgaggagtgtctacccaactccctttctgtattgtccattaataactgtccgttacttaagcagcggtaccaaaagg 321  Q
    |||| | |||||||  ||||||| |||||| ||||||||| ||||||||||   ||||||||| || |||| || ||| ||||||||| |||||||| ||    
T  6593574 tgcccttgtcttgacagcttgccagaggagggtctacccagctccctttctactttgtccattcatgactgcccattaattaagcagctgtaccaaatgg 6593673  T
Q  322 aggaaggaaaacattggcataaaatctgtcacat 355  Q
    |||||||  | ||||||||||||||  |||||||    
T  6593674 aggaaggcgagcattggcataaaattagtcacat 6593707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 22 - 197
Target Start/End: Complemental strand, 5278673 - 5278498
Alignment:
Q  22 agtggggtttgttccaactcaattctctgaaagaattcattgttagtgacgactttgaaaacatagagtcctttccggaggagtactttcttccaccaac 121  Q
    |||||||||||||| |||| |||||||||||||| ||||  |||||||| |||||||||| ||| || ||||| ||||||||| |  | || || |||||    
T  5278673 agtggggtttgttcgaactaaattctctgaaagagttcagagttagtgatgactttgaaagcatggactccttcccggaggagaatctactgcccccaac 5278574  T
Q  122 tcttgaccatctcgagttgagatattgttcaaagctacagataatgaattacaagggtcttcttcatctcaaatct 197  Q
    |||| ||  | |  | |||  | ||||||||||||||   ||||| || | |||||||||||||||||||||||||    
T  5278573 tcttaacactattcatttggaaaattgttcaaagctaagaataatcaactccaagggtcttcttcatctcaaatct 5278498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 22 - 104
Target Start/End: Original strand, 4390934 - 4391016
Alignment:
Q  22 agtggggtttgttccaactcaattctctgaaagaattcattgttagtgacgactttgaaaacatagagtcctttccggaggag 104  Q
    |||||||||||||||||||||||||||| ||||| ||||||||| |||| |||||||||||  | |||||||| || ||||||    
T  4390934 agtggggtttgttccaactcaattctctaaaagatttcattgttggtgatgactttgaaaatgtggagtccttcccagaggag 4391016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 22 - 104
Target Start/End: Complemental strand, 6880524 - 6880442
Alignment:
Q  22 agtggggtttgttccaactcaattctctgaaagaattcattgttagtgacgactttgaaaacatagagtcctttccggaggag 104  Q
    |||||||||||||||||||||||||||||||| |||||| |||| |||| || || |||| | | ||||||||||||||||||    
T  6880524 agtggggtttgttccaactcaattctctgaaacaattcagtgttggtgatgatttggaaatcttggagtcctttccggaggag 6880442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 232 - 355
Target Start/End: Complemental strand, 6235845 - 6235722
Alignment:
Q  232 ttgagtgcttgcctgaggagtgtctacccaactccctttctgtattgtccattaataactgtccgttacttaagcagcggtaccaaaaggaggaaggaaa 331  Q
    ||||| ||||||| |||||| ||||||||| ||||||||||   ||||||||| || ||||||| ||| ||||||||  ||||||||||||| ||||| |    
T  6235845 ttgagagcttgccagaggagggtctacccatctccctttctactttgtccattcatgactgtccattaattaagcagttgtaccaaaaggagcaaggaga 6235746  T
Q  332 acattggcataaaatctgtcacat 355  Q
     | |||||||| ||| | ||||||    
T  6235745 gcgttggcatacaatttctcacat 6235722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 22 - 101
Target Start/End: Complemental strand, 6898096 - 6898017
Alignment:
Q  22 agtggggtttgttccaactcaattctctgaaagaattcattgttagtgacgactttgaaaacatagagtcctttccggag 101  Q
    |||||||||||||||||||||||||||||||| | |||| ||| ||||| || ||||||| | | |||||||||||||||    
T  6898096 agtggggtttgttccaactcaattctctgaaacagttcagtgtaagtgatgattttgaaatcttggagtcctttccggag 6898017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 22 - 104
Target Start/End: Original strand, 6482004 - 6482086
Alignment:
Q  22 agtggggtttgttccaactcaattctctgaaagaattcattgttagtgacgactttgaaaacatagagtcctttccggaggag 104  Q
    |||||||||||||||||||||||||||||||||| || |  |||||||| || ||||||||| | || |||||||| ||||||    
T  6482004 agtggggtttgttccaactcaattctctgaaagagtttagagttagtgatgagtttgaaaacgtggaatcctttccagaggag 6482086  T

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Target: chr3; HSP #16
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 231 - 329
Target Start/End: Complemental strand, 6897887 - 6897789
Alignment:
Q  231 cttgagtgcttgcctgaggagtgtctacccaactccctttctgtattgtccattaataactgtccgttacttaagcagcggtaccaaaaggaggaagga 329  Q
    |||||| ||||||| |||||||||||||||| ||||||||||   ||||||||| || | || || ||| ||||||||  |||||||||||||||||||    
T  6897887 cttgagagcttgccggaggagtgtctacccagctccctttctactttgtccattcatgattgcccattaattaagcagaagtaccaaaaggaggaagga 6897789  T

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Target: chr3; HSP #17
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 145 - 359
Target Start/End: Original strand, 8571093 - 8571307
Alignment:
Q  145 attgttcaaagctacagataatgaattacaagggtcttcttcatctcaaatctctccaatccttacatatcgatggttgccttggtcttgagtgcttgcc 244  Q
    ||||||||||||||   |||||||| |||||||| ||||| || |||||||||||||||||  || ||||      ||| | | |||||||| |||||||    
T  8571093 attgttcaaagctaagaataatgaactacaagggacttctccacctcaaatctctccaatctctaaatattttgtcttgtccttgtcttgagagcttgcc 8571192  T
Q  245 tgaggagtgtctacccaactccctttctgtattgtccattaataactgtccgttacttaagcagcggtaccaaaaggaggaaggaaaacattggcataaa 344  Q
     |||||| ||||||| | ||||||||||   ||| |||||||||  ||| | || |||||| ||  ||| |||||| |||||||| ||| |||||||| |    
T  8571193 agaggagggtctaccaatctccctttctactttggccattaatagatgttcattgcttaaggagaagtatcaaaagaaggaaggagaacgttggcataca 8571292  T
Q  345 atctgtcacatccct 359  Q
    ||  |||||||||||    
T  8571293 attcgtcacatccct 8571307  T

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Target: chr3; HSP #18
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 238 - 358
Target Start/End: Original strand, 4391150 - 4391270
Alignment:
Q  238 gcttgcctgaggagtgtctacccaactccctttctgtattgtccattaataactgtccgttacttaagcagcggtaccaaaaggaggaaggaaaacattg 337  Q
    ||||||| ||| || ||||||| ||||||||||||   |||| |||| |||| ||||| ||||||||| ||| ||||||||||||||||||| |    ||    
T  4391150 gcttgccggagaagggtctaccaaactccctttctcagttgttcattcataaatgtccattacttaaggagcagtaccaaaaggaggaaggagagtgctg 4391249  T
Q  338 gcataaaatctgtcacatccc 358  Q
    ||||| ||| |||||||||||    
T  4391250 gcatacaatttgtcacatccc 4391270  T

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Target: chr3; HSP #19
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 24 - 127
Target Start/End: Complemental strand, 8587932 - 8587829
Alignment:
Q  24 tggggtttgttccaactcaattctctgaaagaattcattgttagtgacgactttgaaaacatagagtcctttccggaggagtactttcttccaccaactc 123  Q
    |||||||||||||||||||||||||| |||   ||||  |||||||| || ||||||||| | |||||||| || |||||| |  |||| ||||||||||    
T  8587932 tggggtttgttccaactcaattctctaaaatctttcaaagttagtgatgagtttgaaaacgtggagtccttcccagaggagaatcttctgccaccaactc 8587833  T
Q  124 ttga 127  Q
    ||||    
T  8587832 ttga 8587829  T

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Target: chr3; HSP #20
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 22 - 104
Target Start/End: Complemental strand, 6263690 - 6263608
Alignment:
Q  22 agtggggtttgttccaactcaattctctgaaagaattcattgttagtgacgactttgaaaacatagagtcctttccggaggag 104  Q
    |||||||||||||||||||||| ||||||||| |||||| | ||||||| || ||||||| | | || |||||||| ||||||    
T  6263690 agtggggtttgttccaactcaaatctctgaaacaattcagtcttagtgatgattttgaaatcttggaatcctttccagaggag 6263608  T

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Target: chr3; HSP #21
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 229 - 327
Target Start/End: Original strand, 6724307 - 6724405
Alignment:
Q  229 gtcttgagtgcttgcctgaggagtgtctacccaactccctttctgtattgtccattaataactgtccgttacttaagcagcggtaccaaaaggaggaag 327  Q
    |||||||  ||||||| |||||| ||||||||| ||||||||||   ||||||||| || |||| || ||| ||||||||  |||||||||||||||||    
T  6724307 gtcttgacagcttgccagaggagggtctacccagctccctttctactttgtccattcatgactgcccattaattaagcagaagtaccaaaaggaggaag 6724405  T

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Target: chr3; HSP #22
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 22 - 124
Target Start/End: Complemental strand, 6945279 - 6945177
Alignment:
Q  22 agtggggtttgttccaactcaattctctgaaagaattcattgttagtgacgactttgaaaacatagagtcctttccggaggagtactttcttccaccaac 121  Q
    |||||||||||||||||||||||||||| |  |||||| |||||||||| || ||||||||| | ||||| || || |||||| |  | || ||||||||    
T  6945279 agtggggtttgttccaactcaattctctcattgaattcgttgttagtgatgagtttgaaaacgtggagtcgttcccagaggagaatctgctgccaccaac 6945180  T
Q  122 tct 124  Q
    |||    
T  6945179 tct 6945177  T

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Target: chr3; HSP #23
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 22 - 104
Target Start/End: Complemental strand, 7748010 - 7747928
Alignment:
Q  22 agtggggtttgttccaactcaattctctgaaagaattcattgttagtgacgactttgaaaacatagagtcctttccggaggag 104  Q
    |||||||||||||||||||||| ||||| ||| ||||   ||||||||| || ||||||| | | ||||||||||||||||||    
T  7748010 agtggggtttgttccaactcaaatctctaaaacaattatgtgttagtgatgattttgaaatcttggagtcctttccggaggag 7747928  T

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Target: chr3; HSP #24
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 229 - 355
Target Start/End: Complemental strand, 6880317 - 6880191
Alignment:
Q  229 gtcttgagtgcttgcctgaggagtgtctacccaactccctttctgtattgtccattaataactgtccgttacttaagcagcggtaccaaaaggaggaagg 328  Q
    |||||||  ||||||| |||||| |||||||||  |||||||||   ||||||||| || | || || ||| ||||||||  ||||||||||||||||||    
T  6880317 gtcttgacagcttgccagaggagggtctacccagttccctttctactttgtccattcatgattgcccattaattaagcagaagtaccaaaaggaggaagg 6880218  T
Q  329 aaaacattggcataaaatctgtcacat 355  Q
    | | | |||||||| |||  |||||||    
T  6880217 agagcgttggcatacaattagtcacat 6880191  T

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Target: chr3; HSP #25
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 22 - 104
Target Start/End: Complemental strand, 7585882 - 7585800
Alignment:
Q  22 agtggggtttgttccaactcaattctctgaaagaattcattgttagtgacgactttgaaaacatagagtcctttccggaggag 104  Q
    |||||||||||||||||||||||||||||| ||  |||  ||||||||| || ||||||||| | ||||| || || ||||||    
T  7585882 agtggggtttgttccaactcaattctctgagagctttcggtgttagtgatgagtttgaaaacgtggagtcgttcccagaggag 7585800  T

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Target: chr3; HSP #26
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 22 - 125
Target Start/End: Complemental strand, 5266090 - 5265987
Alignment:
Q  22 agtggggtttgttccaactcaattctctgaaagaattcattgttagtgacgactttgaaaacatagagtcctttccggaggagtactttcttccaccaac 121  Q
    ||||||||||||||||||| ||||||||| ||   |||| ||||||||| ||| |||||||  | || ||||| ||||||||| |  | || ||||||||    
T  5266090 agtggggtttgttccaactaaattctctggaaagtttcagtgttagtgatgaccttgaaaatgttgactccttcccggaggagaatctactgccaccaac 5265991  T
Q  122 tctt 125  Q
    ||||    
T  5265990 tctt 5265987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 229 - 272
Target Start/End: Complemental strand, 8587727 - 8587684
Alignment:
Q  229 gtcttgagtgcttgcctgaggagtgtctacccaactccctttct 272  Q
    |||||||| ||||||| |||||| ||||||||||||||||||||    
T  8587727 gtcttgagagcttgccagaggagggtctacccaactccctttct 8587684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 22 - 104
Target Start/End: Complemental strand, 6236055 - 6235973
Alignment:
Q  22 agtggggtttgttccaactcaattctctgaaagaattcattgttagtgacgactttgaaaacatagagtcctttccggaggag 104  Q
    |||||||||||||||||||||| ||| | ||| |||| | ||||||||| || ||||||| | | || |||||||| ||||||    
T  6236055 agtggggtttgttccaactcaaatctttaaaacaattgagtgttagtgatgattttgaaatcttggaatcctttccagaggag 6235973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 22 - 104
Target Start/End: Original strand, 6782350 - 6782432
Alignment:
Q  22 agtggggtttgttccaactcaattctctgaaagaattcattgttagtgacgactttgaaaacatagagtcctttccggaggag 104  Q
    |||||||||||||||||||||||||  |||||   ||| |||||| ||| || ||||||||| | |||||||| || ||||||    
T  6782350 agtggggtttgttccaactcaattccttgaaatctttctttgttactgatgagtttgaaaacgtggagtccttcccagaggag 6782432  T

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Target: chr3; HSP #30
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 22 - 124
Target Start/End: Original strand, 6841589 - 6841691
Alignment:
Q  22 agtggggtttgttccaactcaattctctgaaagaattcattgttagtgacgactttgaaaacatagagtcctttccggaggagtactttcttccaccaac 121  Q
    |||||||||||||||||||||||||  |||||   |||| ||||||||| || ||||||||| | ||||| || || |||||| |  | || ||||||||    
T  6841589 agtggggtttgttccaactcaattccttgaaatggttcagtgttagtgatgagtttgaaaacgtggagtcgttcccagaggagaatctgctgccaccaac 6841688  T
Q  122 tct 124  Q
    |||    
T  6841689 tct 6841691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 22 - 104
Target Start/End: Complemental strand, 8469571 - 8469489
Alignment:
Q  22 agtggggtttgttccaactcaattctctgaaagaattcattgttagtgacgactttgaaaacatagagtcctttccggaggag 104  Q
    ||||||||||||||  |||||||||  |||||  |||| ||||||| || || ||||||||| |||||||||| || ||||||    
T  8469571 agtggggtttgttcagactcaattccttgaaatcattctttgttagcgatgagtttgaaaacgtagagtccttcccagaggag 8469489  T

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Target: scaffold0425 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 1)
Name: scaffold0425
Description:

Target: scaffold0425; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 22 - 70
Target Start/End: Original strand, 13555 - 13603
Alignment:
Q  22 agtggggtttgttccaactcaattctctgaaagaattcattgttagtga 70  Q
    |||||||||||||||||||||||||||||||| |||||| |||||||||    
T  13555 agtggggtttgttccaactcaattctctgaaacaattcagtgttagtga 13603  T

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Target: chr7 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 147 - 199
Target Start/End: Original strand, 6575469 - 6575521
Alignment:
Q  147 tgttcaaagctacagataatgaattacaagggtcttcttcatctcaaatctct 199  Q
    ||||||||||||   |||||||| |||||||||||||| || |||||||||||    
T  6575469 tgttcaaagctaagaataatgaactacaagggtcttctccacctcaaatctct 6575521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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