View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12270_high_2 (Length: 405)
Name: NF12270_high_2
Description: NF12270
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12270_high_2 |
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Alignment Details
Target: chr3 (Bit Score: 304; Significance: 1e-171; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 304; E-Value: 1e-171
Query Start/End: Original strand, 21 - 375
Target Start/End: Complemental strand, 39275512 - 39275153
Alignment:
| Q |
21 |
agtaagatggatgagatgagatatgagcgtcatggaacatatggaggagatgttcactatgctaatccatatggatacaataataacaacaggattaagc |
120 |
Q |
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| T |
39275512 |
agtaagatggatgagatgagatatgagcgtcatggaacatatggaggagatgttcactatgctaatccatatggatacaataataacaacaggattaagc |
39275413 |
T |
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| Q |
121 |
ctcatggttatggtcatggtcatggaagtcacaaagtcaattggacactcaagggggtctaatatgcgcatgcttgcttggttaccgttactacctctgg |
220 |
Q |
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| T |
39275412 |
ctcatggtcatggtcatggtcatggaagtcacaaagtcaattggacactcaagggggtctaacatgcgcatgcttgcttggttactgttactacctctgg |
39275313 |
T |
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| Q |
221 |
-----atcgagtatcaataaattgtgtgctttgtttgctgttttcatattttaataagttgccctgattataaatggtgcttcatatatatgatcaatgt |
315 |
Q |
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| T |
39275312 |
atcggatcgagtatcaataaattgtgtgctttgtttgctgttttcatattttaataatttgccctgattataaatggtgcttcctatatatgatcaatgt |
39275213 |
T |
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| Q |
316 |
tatctgtaactcattctgaagctatggaatatatgaacctttatatatatgatatgatta |
375 |
Q |
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| T |
39275212 |
tatctgtaactcattctgaagctatgaaatatatggacttttatatatatgttatgatta |
39275153 |
T |
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