View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12271_high_6 (Length: 239)
Name: NF12271_high_6
Description: NF12271
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12271_high_6 |
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Alignment Details
Target: chr7 (Bit Score: 194; Significance: 1e-105; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 33738034 - 33737816
Alignment:
| Q |
1 |
cataagtagaagcaatacataaaatatggaatgtaattccagcaaaatgcaaatcatttctaacttagaggtgtgaaagtttgagaacatattaacaaac |
100 |
Q |
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| T |
33738034 |
cataagtagaagcaatacataaaatatggaatgtaattccaacaaaatgcaaatcatttctaacttagaggtg--aaagtttgagaacatattaacaaac |
33737937 |
T |
|
| Q |
101 |
caaaaaattatatgttgaagtctagcagtattttatgtcttgtttggtctcgtctctagcgtcgtcccgtctcgtagatctgagcttgtctctccttcat |
200 |
Q |
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||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
33737936 |
caaaaaattatatgttgaagtctagtagtactttatgtcttgtttggtctcgtctctagtgtcgtcccgtctcgtagatctgagcttgtctctccttcat |
33737837 |
T |
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| Q |
201 |
ttcctacaatagtgtatttac |
221 |
Q |
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||||||||||||||||||||| |
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| T |
33737836 |
ttcctacaatagtgtatttac |
33737816 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 96 - 137
Target Start/End: Complemental strand, 33737815 - 33737774
Alignment:
| Q |
96 |
caaaccaaaaaattatatgttgaagtctagcagtattttatg |
137 |
Q |
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| T |
33737815 |
caaaccaaaaaattatatgttgaagtctagcagtactttatg |
33737774 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 24 - 73
Target Start/End: Complemental strand, 41444984 - 41444935
Alignment:
| Q |
24 |
atatggaatgtaattccagcaaaatgcaaatcatttctaacttagaggtg |
73 |
Q |
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||||||||||||||| ||||||| || || ||||||||||||||||||| |
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| T |
41444984 |
atatggaatgtaattttagcaaaaggcgaagcatttctaacttagaggtg |
41444935 |
T |
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