View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12271_low_1 (Length: 416)
Name: NF12271_low_1
Description: NF12271
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12271_low_1 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 393; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 393; E-Value: 0
Query Start/End: Original strand, 1 - 405
Target Start/End: Original strand, 53042587 - 53042991
Alignment:
| Q |
1 |
ccatttactcaatggtgatcataactataaaataggatgaagctggtgccgcagccatcaaaacagttgagttggatgcagttctaggaggacgtgctgt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
53042587 |
ccatttactcaatggtgatcataactataaaataggatgaagctggtgccgcagccatcaaaacagttgagttggatgcagttctaggaggacgtgctgt |
53042686 |
T |
|
| Q |
101 |
tcagtatcgtgaagtacagggtcatgaaactcagaagttcctgtcatatttcaaaccatgtattataccacaagaaggtggagctgcctctggttttaag |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
53042687 |
tcagtatcgtgaagtacagggtcatgaaactcagaagttcctgtcatatttcaaaccatgtattataccacaagaaggtggagctgcctctggttttaag |
53042786 |
T |
|
| Q |
201 |
catgttgaagctgaagaacataagacacggttgtttgtctgcaaagggaaacatgttgtgtatgtcaaagaggcaagtttgatattattcccctgttatt |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
53042787 |
catgttgaagctgaagaacataagacacggttgtttgtctgcaaagggaaacatgttgtgtatgtcaaagaggcaagtttgatattattcccctgttatt |
53042886 |
T |
|
| Q |
301 |
gattcattaaggtttgagacttgcacattattagtatagacaatcacacatatataaacgctagtttctaccttttgattaaatatttatattggtcaca |
400 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | | |
|
|
| T |
53042887 |
gattcattgaggtttgagacttgcacattattagtatagacaatcacacatatataaacgctagtttctaccttttgattaaatatttatattggttata |
53042986 |
T |
|
| Q |
401 |
ggttc |
405 |
Q |
| |
|
||||| |
|
|
| T |
53042987 |
ggttc |
53042991 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 149; Significance: 1e-78; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 149; E-Value: 1e-78
Query Start/End: Original strand, 28 - 280
Target Start/End: Complemental strand, 15965275 - 15965023
Alignment:
| Q |
28 |
taaaataggatgaagctggtgccgcagccatcaaaacagttgagttggatgcagttctaggaggacgtgctgttcagtatcgtgaagtacagggtcatga |
127 |
Q |
| |
|
||||| |||||||||||||||| ||||||||||| ||||||||| ||||||||| ||| ||||||||||||||||||||||| ||||||||||| ||||| |
|
|
| T |
15965275 |
taaaacaggatgaagctggtgctgcagccatcaagacagttgagctggatgcagctctcggaggacgtgctgttcagtatcgggaagtacagggccatga |
15965176 |
T |
|
| Q |
128 |
aactcagaagttcctgtcatatttcaaaccatgtattataccacaagaaggtggagctgcctctggttttaagcatgttgaagctgaagaacataagaca |
227 |
Q |
| |
|
|||| | |||||||| || ||||||||||| ||||||||||| ||||||||||||| ||| ||||||||||| |||| || |||||| |||| |||||| |
|
|
| T |
15965175 |
aactgaaaagttcctttcttatttcaaaccttgtattatacctcaagaaggtggagttgcttctggttttaaacatgccgaggctgaaaaacacaagaca |
15965076 |
T |
|
| Q |
228 |
cggttgtttgtctgcaaagggaaacatgttgtgtatgtcaaagaggcaagttt |
280 |
Q |
| |
|
||||||||||| |||| ||||||||||||||| ||||||||||||||||||| |
|
|
| T |
15965075 |
cggttgtttgtatgcagagggaaacatgttgtacatgtcaaagaggcaagttt |
15965023 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University