View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12271_low_2 (Length: 374)
Name: NF12271_low_2
Description: NF12271
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12271_low_2 |
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Alignment Details
Target: chr6 (Bit Score: 260; Significance: 1e-145; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 260; E-Value: 1e-145
Query Start/End: Original strand, 21 - 359
Target Start/End: Original strand, 6721856 - 6722195
Alignment:
| Q |
21 |
ttttctcatcaaagattatgatcctaaaggaaatggaaaatgtatttgcagcaacaactacatcatcatgatttctcatattattgaagaatcatttaac |
120 |
Q |
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| T |
6721856 |
ttttctcatcaaagattatgatcgtaaaggaaaggggaaatgtatttgcagcaacaactacatcatcatgatttctcatattgttgaagaatcatttaac |
6721955 |
T |
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| Q |
121 |
caaagaagatagttgaggtcacgtat-aacaagtgttgtagatcatttattaatgatcccttctctttggatgtcgaagaatcaagtaagataggacgtt |
219 |
Q |
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| T |
6721956 |
cgaagaagacagttgaggtcacgtaacaacaagtgttgtagatcatttattaatgatcccttctctatggatgtcgaagaatcaagtaagataggacgtt |
6722055 |
T |
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| Q |
220 |
cacgtaagtgctaaagaaggaggattcgccttgaaagatgtggtcataagttacatttgtaatacattcacgatcggcgacgcaaatgtcacaattcact |
319 |
Q |
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| T |
6722056 |
cacgtaagtgctaaagaaggaggattcgtcttgagagatgtggtcataagttccatttgtaatgcattcacgattggcgaggcaaacgttacagttcact |
6722155 |
T |
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| Q |
320 |
aattgcctcaatctatcgtacactatcattccttgtctgt |
359 |
Q |
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| T |
6722156 |
aattgcctcaatctatcgtacaatatcattccttgtctgt |
6722195 |
T |
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