View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12271_low_3 (Length: 267)
Name: NF12271_low_3
Description: NF12271
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12271_low_3 |
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Alignment Details
Target: chr2 (Bit Score: 230; Significance: 1e-127; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 19 - 256
Target Start/End: Complemental strand, 26131173 - 26130936
Alignment:
| Q |
19 |
tgcttggcatctgttaaagaatgcatcaaccaagattgggattcccgattttatgccttatcttaaaaaatgcatgctggctgacattgaggttaataaa |
118 |
Q |
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| T |
26131173 |
tgcttggcatctgttaaagaatgcatcaaccaagattgggattcccgattttatgccttatcttaaaaaatgcatgctggctgacattgaggttaataaa |
26131074 |
T |
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| Q |
119 |
tttgaagggttgtggtctgagatggttcaaaagtttgcgttacaagacaacacttggatcaatgaaatgtatgaaaagaagaagatgtgggcgactgccc |
218 |
Q |
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| T |
26131073 |
tttgaagagttgtggtctgagatggttcaaaagtttgggttacaagacaacacttggatcaatgaaatgtatgaaaagaagaagatgtgggcgactgccc |
26130974 |
T |
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| Q |
219 |
acattagaggaagtttctttgctggtataagaaccaca |
256 |
Q |
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| T |
26130973 |
acattagaggaagtttctttgctggtataagaaccaca |
26130936 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 113; Significance: 3e-57; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 23 - 255
Target Start/End: Original strand, 11010425 - 11010657
Alignment:
| Q |
23 |
tggcatctgttaaagaatgcatcaaccaagattgggattcccgattttatgccttatcttaaaaaatgcatgctggctgacattgaggttaataaatttg |
122 |
Q |
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| T |
11010425 |
tggcatctgttaaggaatgcttccaccaacattgggattcctgattttatgtcttatctgaaaaaatgcatgttgggtgacattgagattaacaaatttg |
11010524 |
T |
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| Q |
123 |
aagggttgtggtctgagatggttcaaaagtttgcgttacaagacaacacttggatcaatgaaatgtatgaaaagaagaagatgtgggcgactgcccacat |
222 |
Q |
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| T |
11010525 |
aaaatctgttgtctgagatggttcaaaagtttgggttagaaaacaacagttggatcaatgagatgtacgaaaagaagaagatgtgggtcacctcttacat |
11010624 |
T |
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| Q |
223 |
tagaggaagtttctttgctggtataagaaccac |
255 |
Q |
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| T |
11010625 |
cagaggaagtttctttgctgatataagaaccac |
11010657 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 112; Significance: 1e-56; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 19 - 210
Target Start/End: Complemental strand, 35241935 - 35241744
Alignment:
| Q |
19 |
tgcttggcatctgttaaagaatgcatcaaccaagattgggattcccgattttatgccttatcttaaaaaatgcatgctggctgacattgaggttaataaa |
118 |
Q |
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||||||||||||||||| |||||| | ||||| ||||||||||| ||||||||| ||||||| ||||||||||||||| ||||||||||| |||| ||| |
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| T |
35241935 |
tgcttggcatctgttaaggaatgcttgcaccaacattgggattcctgattttatgtcttatctgaaaaaatgcatgctgactgacattgagattaacaaa |
35241836 |
T |
|
| Q |
119 |
tttgaagggttgtggtctgagatggttcaaaagtttgcgttacaagacaacacttggatcaatgaaatgtatgaaaagaagaagatgtgggc |
210 |
Q |
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| T |
35241835 |
tttgaagatctgtggtctgagatggttcaaaagtttgggttagaaaacaacaattggatcaatgagatgtacgaaaagaagaagatgtgggc |
35241744 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 45; Significance: 1e-16; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 75 - 195
Target Start/End: Original strand, 21428243 - 21428363
Alignment:
| Q |
75 |
cttatcttaaaaaatgcatgctggctgacattgaggttaataaatttgaagggttgtggtctgagatggttcaaaagtttgcgttacaagacaacacttg |
174 |
Q |
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||||||| |||||||||||| ||| |||| ||||| | | | ||||||| ||| ||| |||||||||| ||||||||| ||||||||||||| ||| |
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| T |
21428243 |
cttatctgaaaaaatgcatgttgggtgaccttgagatcagtgcgtttgaagagttatgggttgagatggttgaaaagtttggtttacaagacaacagttg |
21428342 |
T |
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| Q |
175 |
gatcaatgaaatgtatgaaaa |
195 |
Q |
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| T |
21428343 |
gatcaatgagatgtatgaaaa |
21428363 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 135 - 209
Target Start/End: Original strand, 25813874 - 25813948
Alignment:
| Q |
135 |
ctgagatggttcaaaagtttgcgttacaagacaacacttggatcaatgaaatgtatgaaaagaagaagatgtggg |
209 |
Q |
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|||| |||||||| | ||||| ||| ||||||||| ||||||||||||| |||| || || ||||||||||||| |
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| T |
25813874 |
ctgaaatggttcagaggtttggtttagaagacaacaattggatcaatgaattgtacgagaaaaagaagatgtggg |
25813948 |
T |
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