View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12271_low_4 (Length: 251)
Name: NF12271_low_4
Description: NF12271
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12271_low_4 |
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Alignment Details
Target: chr3 (Bit Score: 173; Significance: 4e-93; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 173; E-Value: 4e-93
Query Start/End: Original strand, 16 - 242
Target Start/End: Original strand, 25254150 - 25254379
Alignment:
| Q |
16 |
gacatcaaaagaagaaaaaatatatataagaacgaatctaacttcgtcaacaccaaacagcatacttagcaaacaatccnnnnnnnnn---ggcttactt |
112 |
Q |
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| T |
25254150 |
gacataaaaagaagaaaaagtatatataagaacgaatctaacttcgtccacaccaaacagcatacttagcaaacaatccaaaaaaaaaaaaggcttactt |
25254249 |
T |
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| Q |
113 |
gattatagtatgttggcatccatgtaagaagaatgaaagttccccagttgtggcaaaagtgggacacaatcagggcccagactggtggtttcgacaaaat |
212 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
25254250 |
gattatagtatgttggcatccatgtaagaagaatgaaagttccccagttgtggcaaaagtgggacacaatcagggcccagaccggtggtttcgacaaaat |
25254349 |
T |
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| Q |
213 |
taatccccaaggtatttccttcacaggttc |
242 |
Q |
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|||||||||||||||||||||||||||||| |
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| T |
25254350 |
taatccccaaggtatttccttcacaggttc |
25254379 |
T |
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