View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12271_low_8 (Length: 217)

Name: NF12271_low_8
Description: NF12271
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12271_low_8
NF12271_low_8
[»] chr6 (1 HSPs)
chr6 (19-205)||(34696727-34696913)
[»] chr2 (5 HSPs)
chr2 (19-205)||(26994369-26994555)
chr2 (133-205)||(27065665-27065738)
chr2 (19-73)||(27065502-27065556)
chr2 (19-79)||(27014548-27014608)
chr2 (133-199)||(27014691-27014757)
[»] chr8 (1 HSPs)
chr8 (138-189)||(18544604-18544655)


Alignment Details
Target: chr6 (Bit Score: 183; Significance: 4e-99; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 183; E-Value: 4e-99
Query Start/End: Original strand, 19 - 205
Target Start/End: Complemental strand, 34696913 - 34696727
Alignment:
Q  19 aaggatttggcatttggatgtgggcacatggtgagcttattttgattcattttattttagagtaattaatgaaacaattaagctgataattgttaagatt 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34696913 aaggatttggcatttggatgtgggcacatggtgagcttattttgattcattttattttagagtaattaatgaaacaattaagctgataattgttaagatt 34696814  T
Q  119 aaacgatatgttatacaatattttggaatgcagacatgcagagattgtggatcaaggttaagacattgtccaatctgtcgacacagg 205  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  34696813 aaacgatatgttatacaatattttggaatgcagacatgcagagattgtggatcaaggttaagacattgtccaatatgtcgacacagg 34696727  T

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Target: chr2 (Bit Score: 175; Significance: 2e-94; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 175; E-Value: 2e-94
Query Start/End: Original strand, 19 - 205
Target Start/End: Complemental strand, 26994555 - 26994369
Alignment:
Q  19 aaggatttggcatttggatgtgggcacatggtgagcttattttgattcattttattttagagtaattaatgaaacaattaagctgataattgttaagatt 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26994555 aaggatttggcatttggatgtgggcacatggtgagcttattttgattcattttattttagagtaattaatgaaacaattaagctgataattgttaagatt 26994456  T
Q  119 aaacgatatgttatacaatattttggaatgcagacatgcagagattgtggatcaaggttaagacattgtccaatctgtcgacacagg 205  Q
    |||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  26994455 aaactatatgttatacaatattttggaatgcagacttgcagagattgtggatcaaggttaagacattgtccaatatgtcgacacagg 26994369  T

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Target: chr2; HSP #2
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 133 - 205
Target Start/End: Original strand, 27065665 - 27065738
Alignment:
Q  133 acaatattttggaatgcagacatgcagagattgtggatcaaggttaagacattgtc-caatctgtcgacacagg 205  Q
    ||||||||||||||||||||| ||||| |||||||||||||||||||||||||||| |||| ||||||||||||    
T  27065665 acaatattttggaatgcagacttgcagggattgtggatcaaggttaagacattgtcacaatatgtcgacacagg 27065738  T

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Target: chr2; HSP #3
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 19 - 73
Target Start/End: Original strand, 27065502 - 27065556
Alignment:
Q  19 aaggatttggcatttggatgtgggcacatggtgagcttattttgattcattttat 73  Q
    |||||||||||||||||||||||||||||||| |||||||||||||| |||||||    
T  27065502 aaggatttggcatttggatgtgggcacatggtaagcttattttgattgattttat 27065556  T

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Target: chr2; HSP #4
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 19 - 79
Target Start/End: Original strand, 27014548 - 27014608
Alignment:
Q  19 aaggatttggcatttggatgtgggcacatggtgagcttattttgattcattttattttaga 79  Q
    ||||||||||| |||||||||||||| ||||||||||| |||||||| |||||||||||||    
T  27014548 aaggatttggcttttggatgtgggcatatggtgagcttgttttgattaattttattttaga 27014608  T

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Target: chr2; HSP #5
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 133 - 199
Target Start/End: Original strand, 27014691 - 27014757
Alignment:
Q  133 acaatattttggaatgcagacatgcagagattgtggatcaaggttaagacattgtccaatctgtcga 199  Q
    ||||||||||||||||||||| |||||||||||||||||||| ||| || ||||||| || ||||||    
T  27014691 acaatattttggaatgcagacttgcagagattgtggatcaagattacgagattgtcctatatgtcga 27014757  T

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Target: chr8 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 138 - 189
Target Start/End: Original strand, 18544604 - 18544655
Alignment:
Q  138 attttggaatgcagacatgcagagattgtggatcaaggttaagacattgtcc 189  Q
    |||||||||||||||| |||||||||||||||||||| |||||  |||||||    
T  18544604 attttggaatgcagacctgcagagattgtggatcaagattaagtgattgtcc 18544655  T

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