View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12272_high_1 (Length: 986)

Name: NF12272_high_1
Description: NF12272
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12272_high_1
NF12272_high_1
[»] chr5 (11 HSPs)
chr5 (19-977)||(15807444-15808402)
chr5 (638-823)||(41859542-41859727)
chr5 (638-834)||(42629498-42629694)
chr5 (641-834)||(9575310-9575503)
chr5 (637-798)||(42840417-42840578)
chr5 (717-817)||(1040119-1040219)
chr5 (638-693)||(42637359-42637414)
chr5 (725-831)||(42637224-42637330)
chr5 (271-333)||(15815386-15815451)
chr5 (271-333)||(15831701-15831766)
chr5 (638-695)||(40545121-40545178)
[»] chr8 (2 HSPs)
chr8 (641-898)||(3367655-3367912)
chr8 (898-970)||(3367529-3367598)
[»] chr2 (3 HSPs)
chr2 (405-616)||(25287071-25287282)
chr2 (750-831)||(16921102-16921183)
chr2 (638-699)||(44937800-44937861)
[»] chr7 (2 HSPs)
chr7 (638-898)||(45866864-45867124)
chr7 (638-691)||(42446349-42446402)
[»] chr1 (1 HSPs)
chr1 (355-490)||(17204357-17204497)
[»] scaffold0129 (2 HSPs)
scaffold0129 (638-693)||(10487-10542)
scaffold0129 (638-732)||(33521-33615)
[»] chr6 (1 HSPs)
chr6 (638-733)||(29131320-29131415)
[»] chr3 (2 HSPs)
chr3 (638-693)||(5162456-5162511)
chr3 (898-962)||(53691512-53691573)


Alignment Details
Target: chr5 (Bit Score: 951; Significance: 0; HSPs: 11)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 951; E-Value: 0
Query Start/End: Original strand, 19 - 977
Target Start/End: Complemental strand, 15808402 - 15807444
Alignment:
Q  19 aacaatgaggtttctagttcacaaaaaatagttgtgcacaaatattcataggacgagcaaaacttctggtattaaattcttccaaaaatatctgcatttt 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  15808402 aacaatgaggtttctagttcacaaaaaatagttgtgcacaaatattcataggacgagcaaaacttctggtattaaattcttacaaaaatatctgcatttt 15808303  T
Q  119 tgtaacaaagaaattgatgcaaatatatcagttgatgattctgttgactacaaattataaaaaacatatattagctgatttcatatctcttacttcatgg 218  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15808302 tgtaacaaagaaattgatgcaaatatatcagttgatgattctgttgactacaaattataaaaaacatatattagctgatttcatatctcttacttcatgg 15808203  T
Q  219 ccactcaagatcaagttgcagtgcgtataggtcgttcctcctaattcataggttgttcctcctaattcaaaagtacttgtgtggttacctttagtccaat 318  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15808202 ccactcaagatcaagttgcagtgcgtataggtcgttcctcctaattcataggttgttcctcctaattcaaaagtacttgtgtggttacctttagtccaat 15808103  T
Q  319 aaaagttgggtttatgttgatttttcaatgacacatatgatgcttgtgatcctggttctattgggatgcttaaggaggtttgatcaggatgctaaggtag 418  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15808102 aaaagttgggtttatgttgatttttcaatgacacatatgatgcttgtgatcctggttctattgggatgcttaaggaggtttgatcaggatgctaaggtag 15808003  T
Q  419 ttatattttatgtcttattttttgaactttagatttgttgtggttggttgatgcatgtgaaaatggattttatgtgaaaattgatttttggtgaaggatt 518  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15808002 ttatattttatgtcttattttttgaactttagatttgttgtggttggttgatgcatgtgaaaatggattttatgtgaaaattgatttttggtgaaggatt 15807903  T
Q  519 gagttgtgtgattgttgttgaaggcaataggattatagtcatgtaataaaattaaactgaagaaatatataggtagtagtagttgatatttatcaaaaat 618  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  15807902 gagttgtgtgattgttgttgaaggcaataggattatagtcatgtaataaaattaaactgaagaaatatataggtagtagtagttgatgtttatcaaaaat 15807803  T
Q  619 taaactgaagaaatcaaaatttcacatatcaattttgggtgaagttgggttcaaagagtcatggaccaaactctttattgtaggtcctttgcctggcatt 718  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15807802 taaactgaagaaatcaaaatttcacatatcaattttgggtgaagttgggttcaaagagtcatggaccaaactctttattgtaggtcctttgcctggcatt 15807703  T
Q  719 gaacatcctattggaatttgtaagaagggcgatatattcttcagaaaaaaggataatgagttagtttggtttgatttaagcacccagagaatcgaagagc 818  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15807702 gaacatcctattggaatttgtaagaagggcgatatattcttcagaaaaaaggataatgagttagtttggtttgatttaagcacccagagaatcgaagagc 15807603  T
Q  819 ttggtgttaaaggtgactcatgttgccggataatgatttataaggaaagccttctaccgcttgaaagaaaaaacaattagttttattttactttctgctt 918  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15807602 ttggtgttaaaggtgactcatgttgccggataatgatttataaggaaagccttctaccgcttgaaagaaaaaacaattagttttattttactttctgctt 15807503  T
Q  919 tgtgagcatcataatgttatggcaatacaccattactgatattggctatctgtgctcct 977  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15807502 tgtgagcatcataatgttatggcaatacaccattactgatattggctatctgtgctcct 15807444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 62; E-Value: 3e-26
Query Start/End: Original strand, 638 - 823
Target Start/End: Complemental strand, 41859727 - 41859542
Alignment:
Q  638 tttcacatatcaattttgggtgaagttgggttcaaagagtcatggaccaaactctttattgtaggtcctttgcctggcattgaacatcctattggaattt 737  Q
    ||||| |||||| |||| |||||||||||| | ||||||||||||| |||||||||  |||||||||| ||| | |   || | | |||||||||| ||     
T  41859727 tttcatatatcagttttaggtgaagttgggattaaagagtcatggatcaaactcttcgttgtaggtccgttgtccgatgttaagcgtcctattggagttg 41859628  T
Q  738 gtaagaagggcgatatattcttcagaaaaaaggataatgagttagtttggtttgatttaagcacccagagaatcgaagagcttggt 823  Q
    ||||||| || ||||| || ||| | ||||||||||||||  |||||| |||| ||||||||||||||||||| ||||| ||||||    
T  41859627 gtaagaaaggagatatgtttttccggaaaaaggataatgaactagttttgtttaatttaagcacccagagaattgaagaccttggt 41859542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 57; E-Value: 3e-23
Query Start/End: Original strand, 638 - 834
Target Start/End: Complemental strand, 42629694 - 42629498
Alignment:
Q  638 tttcacatatcaattttgggtgaagttgggttcaaagagtcatggaccaaactctttattgtaggtcctttgcctggcattgaacatcctattggaattt 737  Q
    ||||| |||||||||||||||||||| ||  | || |||||||||| |||||| |||||||| ||||| ||| |  |  |||| |||||||||||| ||     
T  42629694 tttcatatatcaattttgggtgaagtcggagtgaaggagtcatggatcaaactttttattgtgggtccgttgacctgtgttgagcatcctattggagttg 42629595  T
Q  738 gtaagaagggcgatatattcttcagaaaaaaggataatgagttagtttggtttgatttaagcacccagagaatcgaagagcttggtgttaaaggtga 834  Q
    |||| || || ||||||| ||| | ||||||||||||  |  ||||||| ||| |||||| |||||| | ||| |||||||||||||| ||||||||    
T  42629594 gtaaaaatggtgatatatacttgaaaaaaaaggataacaaactagtttgttttaatttaatcacccaaaaaattgaagagcttggtgtcaaaggtga 42629498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 50; E-Value: 4e-19
Query Start/End: Original strand, 641 - 834
Target Start/End: Complemental strand, 9575503 - 9575310
Alignment:
Q  641 cacatatcaattttgggtgaagttgggttcaaagagtcatggaccaaactctttattgtaggtcctttgcctggcattgaacatcctattggaatttgta 740  Q
    ||||||||| |||||| | |||||||  | || |||||||||||||||||||| || |||| ||| |||       || | |||||||| ||| || |||    
T  9575503 cacatatcagttttggataaagttggaatgaaggagtcatggaccaaactcttcatcgtagatccgttgttctatgttaagcatcctataggagttggta 9575404  T
Q  741 agaagggcgatatattcttcagaaaaaaggataatgagttagtttggtttgatttaagcacccagagaatcgaagagcttggtgttaaaggtga 834  Q
    | ||||| || |||||||| ||||||||||||||| | |||| | ||||| |||||| |||||||| ||| | |||||||||||||||||||||    
T  9575403 aaaagggtgacatattctttagaaaaaaggataatcaattagctaggtttaatttaatcacccagaaaattgtagagcttggtgttaaaggtga 9575310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 637 - 798
Target Start/End: Complemental strand, 42840578 - 42840417
Alignment:
Q  637 atttcacatatcaattttgggtgaagttgggttcaaagagtcatggaccaaactctttattgtaggtcctttgcctggcattgaacatcctattggaatt 736  Q
    ||||||||| ||||||||||||||| ||||  | ||||| |||||||| ||| |||||||||| ||||| || ||| || ||||  |||| ||||||       
T  42840578 atttcacatttcaattttgggtgaacttggtgtaaaagaatcatggactaaagtctttattgttggtcccttaccttgccttgagtatccaattggagca 42840479  T
Q  737 tgtaagaagggcgatatattcttcagaaaaaaggataatgagttagtttggtttgatttaag 798  Q
     | ||||||||| |||||||  | | |||||| || |||||  ||| |||||||||||||||    
T  42840478 gggaagaagggcaatatattgattataaaaaaagacaatgaactagcttggtttgatttaag 42840417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 717 - 817
Target Start/End: Complemental strand, 1040219 - 1040119
Alignment:
Q  717 ttgaacatcctattggaatttgtaagaagggcgatatattcttcagaaaaaaggataatgagttagtttggtttgatttaagcacccagagaatcgaaga 816  Q
    |||| |||||||||||| |  |||||||||  ||||||||||| |||||||| ||  |||| |||||||||||| | |||||||| || ||||| |||||    
T  1040219 ttgagcatcctattggagtcggtaagaaggaagatatattctttagaaaaaacgacgatgaattagtttggtttaacttaagcactcaaagaattgaaga 1040120  T
Q  817 g 817  Q
    |    
T  1040119 g 1040119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 638 - 693
Target Start/End: Complemental strand, 42637414 - 42637359
Alignment:
Q  638 tttcacatatcaattttgggtgaagttgggttcaaagagtcatggaccaaactctt 693  Q
    |||||||||||||||||||||||||| ||| | || || |||||||||||||||||    
T  42637414 tttcacatatcaattttgggtgaagtcggggtgaaggaatcatggaccaaactctt 42637359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 725 - 831
Target Start/End: Complemental strand, 42637330 - 42637224
Alignment:
Q  725 cctattggaatttgtaagaagggcgatatattcttcagaaaaaaggataatgagttagtttggtttgatttaagcacccagagaatcgaagagcttggtg 824  Q
    ||||||||| |  ||||||| || ||||||||||| |||||||| ||| ||||  ||||||| ||| ||||||| || || |||||| || |  ||||||    
T  42637330 cctattggagtgagtaagaatggtgatatattctttagaaaaaacgatgatgaactagtttgctttaatttaagtacacaaagaatccaacaatttggtg 42637231  T
Q  825 ttaaagg 831  Q
    |||||||    
T  42637230 ttaaagg 42637224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 271 - 333
Target Start/End: Complemental strand, 15815451 - 15815386
Alignment:
Q  271 ttgttcctcctaattcaaaagtacttgtgtggtta----cctttagtccaataaaagttgggtttat 333  Q
    ||||||||  |||||||||||||||||||||||||    |||||||| |||||||||| ||||||||    
T  15815451 ttgttccttgtaattcaaaagtacttgtgtggttaattgcctttagt-caataaaagtagggtttat 15815386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 271 - 333
Target Start/End: Complemental strand, 15831766 - 15831701
Alignment:
Q  271 ttgttcctcctaattcaaaagtacttgtgtggtta----cctttagtccaataaaagttgggtttat 333  Q
    ||||||||  |||||||||||||||||||||||||    |||||||| |||||||||| ||||||||    
T  15831766 ttgttccttgtaattcaaaagtacttgtgtggttaattgcctttagt-caataaaagtagggtttat 15831701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 638 - 695
Target Start/End: Original strand, 40545121 - 40545178
Alignment:
Q  638 tttcacatatcaattttgggtgaagttgggttcaaagagtcatggaccaaactcttta 695  Q
    |||||||||||||||||||||||||||||  | || || ||||||| |||||| ||||    
T  40545121 tttcacatatcaattttgggtgaagttggtgtgaaggaatcatggatcaaacttttta 40545178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 174; Significance: 4e-93; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 174; E-Value: 4e-93
Query Start/End: Original strand, 641 - 898
Target Start/End: Complemental strand, 3367912 - 3367655
Alignment:
Q  641 cacatatcaattttgggtgaagttgggttcaaagagtcatggaccaaactctttattgtaggtcctttgcctggcattgaacatcctattggaatttgta 740  Q
    |||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||| ||| || |||||||||||||||||| ||| | |    
T  3367912 cacatatcaattttaggtgaagttggggtcaaagagtcatggaccaaactctttattgtaggtcctatgcgtgacattgaacatcctattggtattggca 3367813  T
Q  741 agaagggcgatatattcttcagaaaaaaggataatgagttagtttggtttgatttaagcacccagagaatcgaagagcttggtgttaaaggtgactcatg 840  Q
    |||||||||||||||||||||||||||| |||||||||  | |||| ||  ||||||||||| ||||||| |||||||||||||||||||||| ||  ||    
T  3367812 agaagggcgatatattcttcagaaaaaaagataatgagcaaatttgtttaaatttaagcacctagagaattgaagagcttggtgttaaaggtggcttgtg 3367713  T
Q  841 ttgccggataatgatttataaggaaagccttctaccgcttgaaagaaaaaacaattag 898  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  3367712 ttgccggataatgatttataaggaaagccttctgccgcttgaaagaaaaaacaattag 3367655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 898 - 970
Target Start/End: Complemental strand, 3367598 - 3367529
Alignment:
Q  898 gttttattttactttctgctttgtgagcatcataatgttatggcaatacaccattactgatattggctatctg 970  Q
    ||||||||||| ||| | ||||||||||||   |||| |||||||||||| ||||||||||||||| ||||||    
T  3367598 gttttattttagtttttactttgtgagcat---aatgatatggcaatacatcattactgatattggttatctg 3367529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 133; Significance: 1e-68; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 133; E-Value: 1e-68
Query Start/End: Original strand, 405 - 616
Target Start/End: Complemental strand, 25287282 - 25287071
Alignment:
Q  405 ggatgctaaggtagttatattttatgtcttattttttgaacttta-gatttgttgtggttggttgatgcatgtgaaaatggattttatgtgaaaattgat 503  Q
    ||||||||||||||||||| |||||||||| |||||| ||||||  ||||||||||||| |||||||| |||||  |||||||||||||||||||| |||    
T  25287282 ggatgctaaggtagttataatttatgtcttctttttttaactttttgatttgttgtggt-ggttgatgtatgtgttaatggattttatgtgaaaatcgat 25287184  T
Q  504 ttttggtgaaggattgagttgtgtgattgttgttgaaggcaataggattatagtcatgtaataaaattaaactgaagaaatatataggtagtagtagttg 603  Q
    ||| | ||||||||||| |||||| ||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||  ||||||||||    
T  25287183 tttcgctgaaggattgaattgtgttattgttgtttaaggcaataggattagagtcatgtaataaaattaaactgaagaaatatataggcggtagtagttg 25287084  T
Q  604 atatttatcaaaa 616  Q
    |||||||||||||    
T  25287083 atatttatcaaaa 25287071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 750 - 831
Target Start/End: Original strand, 16921102 - 16921183
Alignment:
Q  750 atatattcttcagaaaaaaggataatgagttagtttggtttgatttaagcacccagagaatcgaagagcttggtgttaaagg 831  Q
    ||||||||||||||||| | ||||||||  |||| ||||||||||| |  ||||| |  || ||||||||||||||||||||    
T  16921102 atatattcttcagaaaagatgataatgaaatagtctggtttgatttgaatacccaaatgattgaagagcttggtgttaaagg 16921183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 638 - 699
Target Start/End: Complemental strand, 44937861 - 44937800
Alignment:
Q  638 tttcacatatcaattttgggtgaagttgggttcaaagagtcatggaccaaactctttattgt 699  Q
    |||||||||||||||||||||||| | ||  | ||||| |||||||| ||||||||| ||||    
T  44937861 tttcacatatcaattttgggtgaactcggcgtgaaagaatcatggactaaactctttgttgt 44937800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 85; Significance: 5e-40; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 85; E-Value: 5e-40
Query Start/End: Original strand, 638 - 898
Target Start/End: Original strand, 45866864 - 45867124
Alignment:
Q  638 tttcacatatcaattttgggtgaagttgggttcaaagagtcatggaccaaactctttattgtaggtcctttgcctggcattgaacatcctattggaattt 737  Q
    ||||||||||||||||| |||||| ||||  | || |||||||||| |||||| |||||||| ||| ||||| || |  | || ||||||||| |||||     
T  45866864 tttcacatatcaattttaggtgaaattggagtgaaggagtcatggatcaaactttttattgtgggttctttgtcttgtgtcgaccatcctattagaattg 45866963  T
Q  738 gtaagaagggcgatatattcttcagaaaaaaggataatgagttagtttggtttgatttaagcacccagagaatcgaagagcttggtgttaaaggtgactc 837  Q
    |||||| ||| ||||||||||| |||||| | ||| ||||  ||||||  ||| |||||||||| |||| ||| ||||||||||||||||||||| | ||    
T  45866964 gtaagacgggtgatatattctttagaaaagaagatgatgaactagtttcatttaatttaagcacacagaaaattgaagagcttggtgttaaaggttattc 45867063  T
Q  838 atgttgccggataatgatttataaggaaagccttctaccgcttgaaagaaaaaacaattag 898  Q
    |  ||||| ||||||  ||||||||||||||||||||||| |||  ||||  |||||||||    
T  45867064 actttgccagataatagtttataaggaaagccttctaccgattgccagaatcaacaattag 45867124  T

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Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 638 - 691
Target Start/End: Original strand, 42446349 - 42446402
Alignment:
Q  638 tttcacatatcaattttgggtgaagttgggttcaaagagtcatggaccaaactc 691  Q
    |||||||||||||||||||||||| |||   |||| || |||||||||||||||    
T  42446349 tttcacatatcaattttgggtgaacttgctatcaaggaatcatggaccaaactc 42446402  T

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Target: chr1 (Bit Score: 62; Significance: 3e-26; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 62; E-Value: 3e-26
Query Start/End: Original strand, 355 - 490
Target Start/End: Original strand, 17204357 - 17204497
Alignment:
Q  355 atgatgcttgtgatcctggttctattgggatgcttaaggagg--tttgatcaggatgctaaggtagttat-attt-tatgtcttattttttgaactt-ta 449  Q
    |||||| ||||| ||||||||||||||||||  ||||| |||  |||| ||||||||||||||||||||| |||| ||||||||| |||| |||||| |     
T  17204357 atgatgtttgtggtcctggttctattgggatttttaagaaggagtttggtcaggatgctaaggtagttatgatttgtatgtcttagttttggaacttgtt 17204456  T
Q  450 gatttgttgtggttggttgatgcatgtgaaaatggatttta 490  Q
    |||||||||||||||||||||| ||||| ||||||||||||    
T  17204457 gatttgttgtggttggttgatgtatgtggaaatggatttta 17204497  T

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Target: scaffold0129 (Bit Score: 32; Significance: 0.00000002; HSPs: 2)
Name: scaffold0129
Description:

Target: scaffold0129; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 638 - 693
Target Start/End: Original strand, 10487 - 10542
Alignment:
Q  638 tttcacatatcaattttgggtgaagttgggttcaaagagtcatggaccaaactctt 693  Q
    |||||||||||||||||||||||||||||  | || ||||| ||||| ||||||||    
T  10487 tttcacatatcaattttgggtgaagttggtgtgaaggagtcttggactaaactctt 10542  T

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Target: scaffold0129; HSP #2
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 638 - 732
Target Start/End: Complemental strand, 33615 - 33521
Alignment:
Q  638 tttcacatatcaattttgggtgaagttgggttcaaagagtcatggaccaaactctttattgtaggtcctttgcctggcattgaacatcctattgg 732  Q
    |||||||| || |||||||||||| ||||  | || ||||| ||||| |||||||||||| | || ||||| ||| |||| || |||||||||||    
T  33615 tttcacatttctattttgggtgaacttggtgtgaaggagtcttggactaaactctttattattgggcctttaccttgcatcgagcatcctattgg 33521  T

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Target: chr6 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 638 - 733
Target Start/End: Original strand, 29131320 - 29131415
Alignment:
Q  638 tttcacatatcaattttgggtgaagttgggttcaaagagtcatggaccaaactctttattgtaggtcctttgcctggcattgaacatcctattgga 733  Q
    |||||||||||||||||||||||| ||||  | ||||| || ||||||||  |||| ||||| || || ||| ||||| |||| | ||||||||||    
T  29131320 tttcacatatcaattttgggtgaatttggcataaaagaatcgtggaccaagatcttcattgttggaccattgtctggcgttgagcgtcctattgga 29131415  T

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Target: chr3 (Bit Score: 32; Significance: 0.00000002; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 638 - 693
Target Start/End: Original strand, 5162456 - 5162511
Alignment:
Q  638 tttcacatatcaattttgggtgaagttgggttcaaagagtcatggaccaaactctt 693  Q
    |||||||||||||||||||||||||||||  | || || ||||||| |||||||||    
T  5162456 tttcacatatcaattttgggtgaagttggtgtgaaggaatcatggatcaaactctt 5162511  T

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Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 898 - 962
Target Start/End: Original strand, 53691512 - 53691573
Alignment:
Q  898 gttttattttactttctgctttgtgagcatcataatgttatggcaatacaccattactgatattg 962  Q
    ||||||||||| ||||| ||||||||||||   | || ||| |||||||||||||||||||||||    
T  53691512 gttttattttagtttctactttgtgagcat---attggtattgcaatacaccattactgatattg 53691573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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