View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12272_high_6 (Length: 392)
Name: NF12272_high_6
Description: NF12272
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12272_high_6 |
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Alignment Details
Target: chr2 (Bit Score: 299; Significance: 1e-168; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 299; E-Value: 1e-168
Query Start/End: Original strand, 71 - 381
Target Start/End: Complemental strand, 26131246 - 26130936
Alignment:
| Q |
71 |
ttataactgatggtgaccttgcaatgaaagattccattacaaaaatattccctgccgcccatcacagattgtgtgcttggcatctgttaaagaatgcatc |
170 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26131246 |
ttataactgatggtgaccttgcaatgaaagattccattacaaaaatattccctgcagcccatcacagattgtgtgcttggcatctgttaaagaatgcatc |
26131147 |
T |
|
| Q |
171 |
aaccaagattgggattcccgattttatgccttatcttaaaaaatgcatgctggctgacattgaggttaataaatttgaagggttgtggtctgagatggtt |
270 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
26131146 |
aaccaagattgggattcccgattttatgccttatcttaaaaaatgcatgctggctgacattgaggttaataaatttgaagagttgtggtctgagatggtt |
26131047 |
T |
|
| Q |
271 |
caaaagtttgcgttacaagacaacacttggatcaatgaaatgtatgaaaagaagaagatgtgggcgactgcccacattagaggaagtttctttgctggta |
370 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26131046 |
caaaagtttgggttacaagacaacacttggatcaatgaaatgtatgaaaagaagaagatgtgggcgactgcccacattagaggaagtttctttgctggta |
26130947 |
T |
|
| Q |
371 |
taagaaccaca |
381 |
Q |
| |
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||||||||||| |
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| T |
26130946 |
taagaaccaca |
26130936 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 160; Significance: 4e-85; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 160; E-Value: 4e-85
Query Start/End: Original strand, 20 - 335
Target Start/End: Complemental strand, 35242059 - 35241744
Alignment:
| Q |
20 |
ggttgttggaacaattcttgattgcaatgaatggtaagcctcctttatccgttataactgatggtgaccttgcaatgaaagattccattacaaaaatatt |
119 |
Q |
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|||||||||||||||| |||| ||||||||| ||||| |||||||| || |||||||| ||||| ||||||||||||||| || |||||| ||| | || |
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| T |
35242059 |
ggttgttggaacaatttttgagtgcaatgaacggtaaacctcctttgtcagttataacagatggagaccttgcaatgaaaaatgccattaaaaaggtttt |
35241960 |
T |
|
| Q |
120 |
ccctgccgcccatcacagattgtgtgcttggcatctgttaaagaatgcatcaaccaagattgggattcccgattttatgccttatcttaaaaaatgcatg |
219 |
Q |
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| T |
35241959 |
tcctgcagcgcaccacaggttgtgtgcttggcatctgttaaggaatgcttgcaccaacattgggattcctgattttatgtcttatctgaaaaaatgcatg |
35241860 |
T |
|
| Q |
220 |
ctggctgacattgaggttaataaatttgaagggttgtggtctgagatggttcaaaagtttgcgttacaagacaacacttggatcaatgaaatgtatgaaa |
319 |
Q |
| |
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||| ||||||||||| |||| |||||||||| ||||||||||||||||||||||||||| |||| || |||||| |||||||||||| ||||| |||| |
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| T |
35241859 |
ctgactgacattgagattaacaaatttgaagatctgtggtctgagatggttcaaaagtttgggttagaaaacaacaattggatcaatgagatgtacgaaa |
35241760 |
T |
|
| Q |
320 |
agaagaagatgtgggc |
335 |
Q |
| |
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|||||||||||||||| |
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| T |
35241759 |
agaagaagatgtgggc |
35241744 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 154; Significance: 1e-81; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 154; E-Value: 1e-81
Query Start/End: Original strand, 23 - 380
Target Start/End: Original strand, 11010300 - 11010657
Alignment:
| Q |
23 |
tgttggaacaattcttgattgcaatgaatggtaagcctcctttatccgttataactgatggtgaccttgcaatgaaagattccattacaaaaatattccc |
122 |
Q |
| |
|
||||||||||||| |||| ||||||||| ||||| |||||||| || |||||||| ||||| ||||||||||||||| || |||||| ||| | || || |
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| T |
11010300 |
tgttggaacaatttttgagtgcaatgaacggtaaacctcctttgtcagttataacagatggcgaccttgcaatgaaaaatgccattaaaaaggtttttcc |
11010399 |
T |
|
| Q |
123 |
tgccgcccatcacagattgtgtgcttggcatctgttaaagaatgcatcaaccaagattgggattcccgattttatgccttatcttaaaaaatgcatgctg |
222 |
Q |
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| | || || ||||| |||||||| ||||||||||||| |||||| || ||||| ||||||||||| ||||||||| ||||||| |||||||||||| || |
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| T |
11010400 |
tacagcgcaccacaggttgtgtgcctggcatctgttaaggaatgcttccaccaacattgggattcctgattttatgtcttatctgaaaaaatgcatgttg |
11010499 |
T |
|
| Q |
223 |
gctgacattgaggttaataaatttgaagggttgtggtctgagatggttcaaaagtttgcgttacaagacaacacttggatcaatgaaatgtatgaaaaga |
322 |
Q |
| |
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| |||||||||| |||| ||||||||| ||| ||||||||||||||||||||||| |||| || |||||| |||||||||||| ||||| ||||||| |
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| T |
11010500 |
ggtgacattgagattaacaaatttgaaaatctgttgtctgagatggttcaaaagtttgggttagaaaacaacagttggatcaatgagatgtacgaaaaga |
11010599 |
T |
|
| Q |
323 |
agaagatgtgggcgactgcccacattagaggaagtttctttgctggtataagaaccac |
380 |
Q |
| |
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|||||||||||| || | |||| ||||||||||||||||||| |||||||||||| |
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| T |
11010600 |
agaagatgtgggtcacctcttacatcagaggaagtttctttgctgatataagaaccac |
11010657 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 53; Significance: 3e-21; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 20 - 320
Target Start/End: Original strand, 21428063 - 21428363
Alignment:
| Q |
20 |
ggttgttggaacaattcttgattgcaatgaatggtaagcctcctttatccgttataactgatggtgaccttgcaatgaaagattccattacaaaaatatt |
119 |
Q |
| |
|
||||||||||||| ||||| | ||||||||| || |||| || ||||| || || |||||||| ||||||||||||| | || | || | ||| |||| |
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| T |
21428063 |
ggttgttggaacagttcttaagtgcaatgaaagggaagcatctgttatctgtaatcactgatggagaccttgcaatgagaaatgctatcaagaaagtatt |
21428162 |
T |
|
| Q |
120 |
ccctgccgcccatcacagattgtgtgcttggcatctgttaaagaatgcatcaaccaagattgggattcccgattttatgccttatcttaaaaaatgcatg |
219 |
Q |
| |
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||| ||| ||||| || ||||||| || ||| |||| |||||||||| |||| |||| ||||| | | ||| ||||||| |||||||||||| |
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| T |
21428163 |
ccccaacgcttatcaccgactgtgtgcgtgacatttgttgcagaatgcatcgtccaatattgaaattccagtagtaatgtcttatctgaaaaaatgcatg |
21428262 |
T |
|
| Q |
220 |
ctggctgacattgaggttaataaatttgaagggttgtggtctgagatggttcaaaagtttgcgttacaagacaacacttggatcaatgaaatgtatgaaa |
319 |
Q |
| |
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||| |||| ||||| | | | ||||||| ||| ||| |||||||||| ||||||||| ||||||||||||| |||||||||||| |||||||||| |
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| T |
21428263 |
ttgggtgaccttgagatcagtgcgtttgaagagttatgggttgagatggttgaaaagtttggtttacaagacaacagttggatcaatgagatgtatgaaa |
21428362 |
T |
|
| Q |
320 |
a |
320 |
Q |
| |
|
| |
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|
| T |
21428363 |
a |
21428363 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 260 - 334
Target Start/End: Original strand, 25813874 - 25813948
Alignment:
| Q |
260 |
ctgagatggttcaaaagtttgcgttacaagacaacacttggatcaatgaaatgtatgaaaagaagaagatgtggg |
334 |
Q |
| |
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|||| |||||||| | ||||| ||| ||||||||| ||||||||||||| |||| || || ||||||||||||| |
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|
| T |
25813874 |
ctgaaatggttcagaggtttggtttagaagacaacaattggatcaatgaattgtacgagaaaaagaagatgtggg |
25813948 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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