View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12272_low_3 (Length: 595)
Name: NF12272_low_3
Description: NF12272
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12272_low_3 |
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Alignment Details
Target: chr4 (Bit Score: 276; Significance: 1e-154; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 270 - 582
Target Start/End: Complemental strand, 43984108 - 43983796
Alignment:
| Q |
270 |
gatatctgcataagatgccgtgtctgattttgctacatcttttttggtttagcacgatattggtaagaaattttcaccgcttagcagtaattaatttcgt |
369 |
Q |
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| T |
43984108 |
gatatctgcataagatgccgtgtctgattttgctacatcttttttggtttagcacgatattggtacgaaattttcaccgcttagcagtaattaatttcgt |
43984009 |
T |
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| Q |
370 |
tgggaaatatgtgagagtcaataattaaactctgaaccttaggtttaaggagctcaaatctcttattacttggattaattatacttttgtatttggcatt |
469 |
Q |
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| T |
43984008 |
tgggaaatatgtgagagtcaataattaaactctgaaccttatgtttaaggagcttaaatctcttattacttggatcaattatacttttgtatttggcatt |
43983909 |
T |
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| Q |
470 |
gtttatgtttaataaaagtcattttattttggatcaattgaaggattgtannnnnnnaacttttatgttcatcttatttgtcattcctcttcccaaaagc |
569 |
Q |
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| T |
43983908 |
gtttatgtttaataaaagtcattttattttggatcaattgaaggattgtatttttttaacttttatgttcatcttatttgtcattcctcttcccaaaagc |
43983809 |
T |
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| Q |
570 |
tttgtaacagacc |
582 |
Q |
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| T |
43983808 |
tttgtaacagacc |
43983796 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 76; E-Value: 7e-35
Query Start/End: Original strand, 35 - 110
Target Start/End: Complemental strand, 43984310 - 43984235
Alignment:
| Q |
35 |
ttactaattttggtcatttctttgctgctgcgggtggaattttagtgtgcactgatgtggaagtttattggggttt |
110 |
Q |
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| T |
43984310 |
ttactaattttggtcatttctttgctgctgcgggtggaattttagtgtgcactgatgtggaagtttattggggttt |
43984235 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 155 - 202
Target Start/End: Complemental strand, 43984223 - 43984176
Alignment:
| Q |
155 |
tggagaaatgtaggatatttgaaagctgttggttgagagttgttgtgc |
202 |
Q |
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| T |
43984223 |
tggagaaatgtaggatatttgagagctgttggttgagagttgttgtgc |
43984176 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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