View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12272_low_4 (Length: 546)
Name: NF12272_low_4
Description: NF12272
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12272_low_4 |
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Alignment Details
Target: chr7 (Bit Score: 357; Significance: 0; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 357; E-Value: 0
Query Start/End: Original strand, 1 - 420
Target Start/End: Original strand, 25522815 - 25523220
Alignment:
| Q |
1 |
aaaaagtttaaagataagaaaacatccataacataaaccaaaagacaagccattggcattttagcacttcatacaacatataataaacacaacaacttat |
100 |
Q |
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||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| || |||||||| |
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| T |
25522815 |
aaaaagtttaaagataagaaaacatccattacataaaccaaaagacaagccattggcattttagcacttcatacacca--------------caacttat |
25522900 |
T |
|
| Q |
101 |
tggtattaacaaacaacatgataagtaaaacagaacaccagaactcaaaacatgttttcttcttctttcttttagtcattcctaaacttggattcatcaa |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
25522901 |
tggtattaacaaacaacatgataagtaaaacagaacaccagaactcaaaacatgttttcttcttctttcttctagtcattcctaaacttggattcatcaa |
25523000 |
T |
|
| Q |
201 |
tgtctattccttcctcagcagcacgttgttcaccagacttatccatagtactgagtcctcctttacggcccatttcttgatacccttctctccccatctg |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25523001 |
tgtctattccttcctcagcagcacgttgttcaccagacttatccatagtactgagtcctcctttacggcccatttcttgatacccttctctccccatctg |
25523100 |
T |
|
| Q |
301 |
ctctttccttgtctgccctccttttgttcccatctcttgatacccttctgaccctaactgctgcttccttgtctgccctccacgactccttcctacacat |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25523101 |
ctctttccttgtctgccctccttttgttcccatctcttgatatccttctgaccctaactgctgcttccttgtctgccctccacgactccttcctacacat |
25523200 |
T |
|
| Q |
401 |
acattcaaatcatatatagt |
420 |
Q |
| |
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|||||||||||||||||||| |
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| T |
25523201 |
acattcaaatcatatatagt |
25523220 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 460 - 531
Target Start/End: Original strand, 25523238 - 25523309
Alignment:
| Q |
460 |
aagaaaaaagtgaatatattaatcattaatgcatgccttcagcaaggtgttgttgagcttcaagactctttc |
531 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25523238 |
aagaaaaaagtgaatatattaatcattaatgcatgccttcagcaaggtgttgttgagcttcaagactctttc |
25523309 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 335 - 395
Target Start/End: Original strand, 25514099 - 25514159
Alignment:
| Q |
335 |
tcttgatacccttctgaccctaactgctgcttccttgtctgccctccacgactccttccta |
395 |
Q |
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||||||||||||||||| |||||||| ||||||||||||||||||||| | |||||||||| |
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| T |
25514099 |
tcttgatacccttctgatcctaactgatgcttccttgtctgccctccatggctccttccta |
25514159 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 53; Significance: 4e-21; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 185 - 321
Target Start/End: Complemental strand, 5243279 - 5243143
Alignment:
| Q |
185 |
aacttggattcatcaatgtctattccttcctcagcagcacgttgttcaccagacttatccatagtactgagtcctcctttacggcccatttcttgatacc |
284 |
Q |
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|||||||| |||||||| || || |||||||| ||||||||| | | || ||||| |||||||| || |||||||||||||| ||||| || ||||||| |
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| T |
5243279 |
aacttggactcatcaatatcaataccttcctcttcagcacgttctcctcctgacttctccatagtgctcagtcctcctttacgtcccatctcctgatacc |
5243180 |
T |
|
| Q |
285 |
cttctctccccatctgctctttccttgtctgccctcc |
321 |
Q |
| |
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||||| |||| | ||||| ||||||||||||||||| |
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| T |
5243179 |
cttctgtccctagttgctccttccttgtctgccctcc |
5243143 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 328 - 381
Target Start/End: Complemental strand, 5243196 - 5243143
Alignment:
| Q |
328 |
tcccatctcttgatacccttctgaccctaactgctgcttccttgtctgccctcc |
381 |
Q |
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||||||||| ||||||||||||| ||||| |||| |||||||||||||||||| |
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| T |
5243196 |
tcccatctcctgatacccttctgtccctagttgctccttccttgtctgccctcc |
5243143 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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