View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12272_low_5 (Length: 514)

Name: NF12272_low_5
Description: NF12272
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12272_low_5
NF12272_low_5
[»] chr1 (3 HSPs)
chr1 (93-507)||(2557729-2558144)
chr1 (19-49)||(2557680-2557710)
chr1 (280-313)||(12891612-12891645)
[»] chr6 (4 HSPs)
chr6 (233-313)||(16477090-16477171)
chr6 (233-313)||(18860023-18860104)
chr6 (259-313)||(1786902-1786956)
chr6 (233-313)||(15052321-15052402)
[»] chr5 (3 HSPs)
chr5 (233-313)||(21825739-21825820)
chr5 (233-313)||(25904735-25904816)
chr5 (233-287)||(3153513-3153569)
[»] chr4 (41 HSPs)
chr4 (233-309)||(12182065-12182142)
chr4 (242-309)||(12180491-12180558)
chr4 (206-313)||(12184628-12184737)
chr4 (233-331)||(12177327-12177425)
chr4 (233-313)||(12170071-12170152)
chr4 (254-331)||(12189626-12189702)
chr4 (259-331)||(12178907-12178978)
chr4 (245-313)||(12180825-12180893)
chr4 (259-331)||(12184291-12184362)
chr4 (233-331)||(12189282-12189380)
chr4 (233-309)||(12174133-12174210)
chr4 (233-309)||(12178585-12178662)
chr4 (233-309)||(12183968-12184045)
chr4 (259-331)||(12182387-12182458)
chr4 (233-331)||(12184953-12185051)
chr4 (233-331)||(12185297-12185395)
chr4 (233-331)||(12186945-12187043)
chr4 (233-331)||(12187289-12187387)
chr4 (247-313)||(12169482-12169548)
chr4 (259-313)||(12172454-12172508)
chr4 (233-306)||(12172786-12172860)
chr4 (245-307)||(12173453-12173515)
chr4 (233-310)||(12174798-12174876)
chr4 (264-313)||(12169167-12169216)
chr4 (245-310)||(12182731-12182796)
chr4 (233-313)||(12188956-12189037)
chr4 (246-310)||(12169779-12169843)
chr4 (259-331)||(12173103-12173174)
chr4 (232-331)||(12186602-12186701)
chr4 (232-331)||(12188596-12188695)
chr4 (246-309)||(12173792-12173855)
chr4 (246-311)||(12170661-12170726)
chr4 (233-309)||(12175142-12175218)
chr4 (245-310)||(12179251-12179316)
chr4 (259-331)||(12174453-12174524)
chr4 (233-311)||(12170367-12170446)
chr4 (234-318)||(4374977-4375062)
chr4 (249-331)||(12176984-12177067)
chr4 (220-291)||(12186297-12186370)
chr4 (220-291)||(12188291-12188364)
chr4 (264-331)||(12170986-12171052)
[»] chr2 (52 HSPs)
chr2 (233-313)||(24621697-24621778)
chr2 (233-313)||(24622016-24622097)
chr2 (233-313)||(24622335-24622416)
chr2 (233-313)||(24622619-24622700)
chr2 (233-313)||(24622903-24622984)
chr2 (233-313)||(24623506-24623587)
chr2 (233-313)||(24623825-24623906)
chr2 (233-313)||(24624418-24624499)
chr2 (233-313)||(24624737-24624818)
chr2 (233-313)||(24625021-24625102)
chr2 (233-313)||(24625340-24625421)
chr2 (233-313)||(24626913-24626994)
chr2 (233-313)||(24631399-24631480)
chr2 (233-313)||(24631718-24631799)
chr2 (233-313)||(24632002-24632083)
chr2 (233-313)||(24632286-24632367)
chr2 (233-313)||(24632605-24632686)
chr2 (233-313)||(24632889-24632970)
chr2 (233-313)||(24633173-24633254)
chr2 (233-313)||(24633492-24633573)
chr2 (233-313)||(24633811-24633892)
chr2 (233-313)||(24634095-24634176)
chr2 (233-313)||(24634698-24634779)
chr2 (233-313)||(24638777-24638858)
chr2 (233-313)||(24639096-24639177)
chr2 (233-313)||(24623222-24623303)
chr2 (233-313)||(24627232-24627313)
chr2 (233-313)||(24627516-24627597)
chr2 (233-313)||(24631115-24631196)
chr2 (233-313)||(3348064-3348145)
chr2 (233-313)||(24625982-24626063)
chr2 (233-313)||(24634414-24634495)
chr2 (233-313)||(24638458-24638539)
chr2 (261-313)||(24626302-24626354)
chr2 (233-313)||(24620764-24620848)
chr2 (245-313)||(24619616-24619687)
chr2 (233-313)||(24621086-24621171)
chr2 (233-313)||(24621409-24621494)
chr2 (233-313)||(24625659-24625744)
chr2 (233-313)||(24626625-24626710)
chr2 (233-313)||(24635569-24635654)
chr2 (233-313)||(24636270-24636355)
chr2 (233-313)||(24636593-24636678)
chr2 (233-313)||(24637518-24637603)
chr2 (261-313)||(24637841-24637893)
chr2 (233-313)||(24639445-24639530)
chr2 (233-313)||(24639768-24639853)
chr2 (233-313)||(24640091-24640176)
chr2 (233-313)||(24635246-24635331)
chr2 (233-313)||(24636916-24637001)
chr2 (233-287)||(24630857-24630912)
chr2 (243-293)||(38802330-38802380)
[»] scaffold1024 (1 HSPs)
scaffold1024 (233-313)||(27-108)
[»] chr3 (4 HSPs)
chr3 (259-313)||(14903159-14903213)
chr3 (233-309)||(16990067-16990144)
chr3 (245-313)||(3732693-3732761)
chr3 (246-314)||(30729417-30729485)
[»] chr8 (3 HSPs)
chr8 (265-312)||(13642504-13642551)
chr8 (265-312)||(13742916-13742963)
chr8 (266-313)||(15246341-15246388)
[»] chr7 (1 HSPs)
chr7 (233-293)||(44836736-44836797)


Alignment Details
Target: chr1 (Bit Score: 259; Significance: 1e-144; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 93 - 507
Target Start/End: Original strand, 2557729 - 2558144
Alignment:
Q  93 tataggatttgagttcaggtgctagacatgcgtgacatgattgtttgaaatcttgtatttgttacttcttagagtagaaaagataannnnnnnnaagctc 192  Q
    ||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||         |  |||    
T  2557729 tataggatttgagttcaggggctagacatgcttgacatgattgtttgaaatcttgtatttgttacttcttagagtggaaaagatagtttttttaagtctc 2557828  T
Q  193 agtttagttcaatgatcatagaagtagtaatgcactagatccatcagaatctgcagttaagcgtgtttggccgagagtagtactaggatgggtgacctcc 292  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2557829 agtttagttcaacgatcatagaagtagtaatgcactagatccatcagaatctgcagttaagcgtgtttggccgagagtagtactaggatgggtgacctcc 2557928  T
Q  293 tgggaagtccttgtgttgcacttcatccctcc--attttttgccatgtgatgtttctacacta-tctttttatttaaagaaggggaaaatgtctttcgga 389  Q
    ||||||||||||||||||||||||||||||||   ||||||||||||||||||||||||| || |||||||||||| |||| |||||||||||||||||     
T  2557929 tgggaagtccttgtgttgcacttcatccctcctatttttttgccatgtgatgtttctacattattctttttatttatagaa-gggaaaatgtctttcggg 2558027  T
Q  390 attgaaaacatgggtataaatgacggtcctttgtttgcatttggnnnnnnnnattacattcatatttgatttgttatgcttttgcatctttacttgatat 489  Q
    |||| |||||||||||| |||| |||||||||||||||||||          ||||||||||||||||||||||| |||||||| |||||||||||||||    
T  2558028 attgtaaacatgggtatcaatggcggtcctttgtttgcattt-tatttttttattacattcatatttgatttgttctgcttttgtatctttacttgatat 2558126  T
Q  490 cacttcacaggttctgct 507  Q
    ||||||| ||||| ||||    
T  2558127 cacttcataggttttgct 2558144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 19 - 49
Target Start/End: Original strand, 2557680 - 2557710
Alignment:
Q  19 ataatgggcctctcaattgcttaaaaaattc 49  Q
    |||||||||||||||||||||||||||||||    
T  2557680 ataatgggcctctcaattgcttaaaaaattc 2557710  T

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Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 280 - 313
Target Start/End: Complemental strand, 12891645 - 12891612
Alignment:
Q  280 atgggtgacctcctgggaagtccttgtgttgcac 313  Q
    ||||||||||| ||||||||||||||||||||||    
T  12891645 atgggtgaccttctgggaagtccttgtgttgcac 12891612  T

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Target: chr6 (Bit Score: 62; Significance: 1e-26; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 233 - 313
Target Start/End: Complemental strand, 16477171 - 16477090
Alignment:
Q  233 ccatcagaa-tctgcagttaagcgtgtttggccgagagtagtactaggatgggtgacctcctgggaagtccttgtgttgcac 313  Q
    ||||||||| |||||||| ||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16477171 ccatcagaactctgcagtcaagcgtgcttgggcgagagtagtactaggatgggtgacctcctgggaagtccttgtgttgcac 16477090  T

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Target: chr6; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 233 - 313
Target Start/End: Original strand, 18860023 - 18860104
Alignment:
Q  233 ccatcagaa-tctgcagttaagcgtgtttggccgagagtagtactaggatgggtgacctcctgggaagtccttgtgttgcac 313  Q
    ||||||||| |||||||||||||||| |||| |||||||||||||||||||||||||||||||| |||||||||||||||||    
T  18860023 ccatcagaactctgcagttaagcgtgcttgggcgagagtagtactaggatgggtgacctcctggaaagtccttgtgttgcac 18860104  T

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Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 259 - 313
Target Start/End: Complemental strand, 1786956 - 1786902
Alignment:
Q  259 ttggccgagagtagtactaggatgggtgacctcctgggaagtccttgtgttgcac 313  Q
    |||| ||||||||||| ||||||||||||||| |||| ||||| |||||||||||    
T  1786956 ttggacgagagtagtattaggatgggtgaccttctggtaagtctttgtgttgcac 1786902  T

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Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 233 - 313
Target Start/End: Original strand, 15052321 - 15052402
Alignment:
Q  233 ccatcagaa-tctgcagttaagcgtgtttggccgagagtagtactaggatgggtgacctcctgggaagtccttgtgttgcac 313  Q
    ||||||||| ||||||||||| ||||||||| ||| | | ||||||| |||| ||| ||| || ||||| ||||||||||||    
T  15052321 ccatcagaactctgcagttaaacgtgtttggacgaaaatggtactagaatggatgatctcatgagaagttcttgtgttgcac 15052402  T

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Target: chr5 (Bit Score: 62; Significance: 1e-26; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 233 - 313
Target Start/End: Original strand, 21825739 - 21825820
Alignment:
Q  233 ccatcagaa-tctgcagttaagcgtgtttggccgagagtagtactaggatgggtgacctcctgggaagtccttgtgttgcac 313  Q
    ||||||||| |||||||| ||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21825739 ccatcagaactctgcagtcaagcgtgcttgggcgagagtagtactaggatgggtgacctcctgggaagtccttgtgttgcac 21825820  T

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Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 233 - 313
Target Start/End: Complemental strand, 25904816 - 25904735
Alignment:
Q  233 ccatcagaa-tctgcagttaagcgtgtttggccgagagtagtactaggatgggtgacctcctgggaagtccttgtgttgcac 313  Q
    ||||||||| || |||||||||||| ||||| ||||||||||| || ||||| ||||||  ||| |||||||||||||||||    
T  25904816 ccatcagaactccgcagttaagcgtatttggacgagagtagtattaagatggatgaccttttggaaagtccttgtgttgcac 25904735  T

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Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 233 - 287
Target Start/End: Complemental strand, 3153569 - 3153513
Alignment:
Q  233 ccatcagaa-tctgcagttaagcgtgtttggccgagagtagtac-taggatgggtga 287  Q
    ||||||||| || ||||||||||||| |||| |||||||||||| ||||||||||||    
T  3153569 ccatcagaactccgcagttaagcgtgcttgggcgagagtagtacttaggatgggtga 3153513  T

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Target: chr4 (Bit Score: 62; Significance: 1e-26; HSPs: 41)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 233 - 309
Target Start/End: Complemental strand, 12182142 - 12182065
Alignment:
Q  233 ccatcagaa-tctgcagttaagcgtgtttggccgagagtagtactaggatgggtgacctcctgggaagtccttgtgtt 309  Q
    ||||||||| |||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  12182142 ccatcagaactctgcagttaagcgtgcttgggcgagagtagtactaggatgggtgacctcctgggaagtccttgtgtt 12182065  T

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Target: chr4; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 242 - 309
Target Start/End: Complemental strand, 12180558 - 12180491
Alignment:
Q  242 tctgcagttaagcgtgtttggccgagagtagtactaggatgggtgacctcctgggaagtccttgtgtt 309  Q
    |||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  12180558 tctgcagttaagcgtgcttgggcgagagtagtactaggatgggtgacctcctgggaagtccttgtgtt 12180491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 206 - 313
Target Start/End: Complemental strand, 12184737 - 12184628
Alignment:
Q  206 gatcatagaagtagtaatgcactagatcca-tcagaa-tctgcagttaagcgtgtttggccgagagtagtactaggatgggtgacctcctgggaagtcct 303  Q
    ||||||| ||||| ||||||||  |||||| |||||| || ||||||||||||| |||| |||||||||||| ||||||||||||||||||| |||||||    
T  12184737 gatcatacaagtactaatgcaccggatccaatcagaactccgcagttaagcgtgcttgggcgagagtagtaccaggatgggtgacctcctggaaagtcct 12184638  T
Q  304 tgtgttgcac 313  Q
    ||||||||||    
T  12184637 tgtgttgcac 12184628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 233 - 331
Target Start/End: Complemental strand, 12177425 - 12177327
Alignment:
Q  233 ccatcagaa-tctgcagttaagcgtgtttggccgagagtagtactaggatgggtgacctcctgggaagtccttgtgttgcacttcatccctccatttttt 331  Q
    ||||||||| || ||||||||||||| |||| |||||||||||||||||||||||||| |||||||||||||||| |||||| || |||| |||||||||    
T  12177425 ccatcagaactccgcagttaagcgtgcttgggcgagagtagtactaggatgggtgaccacctgggaagtccttgtattgcacctc-tcccaccatttttt 12177327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 233 - 313
Target Start/End: Complemental strand, 12170152 - 12170071
Alignment:
Q  233 ccatcagaa-tctgcagttaagcgtgtttggccgagagtagtactaggatgggtgacctcctgggaagtccttgtgttgcac 313  Q
    ||||||||| |||||||||||||||| | || |||||||||||||| ||||||||||||| |||||||||||||||||||||    
T  12170152 ccatcagaactctgcagttaagcgtgctagggcgagagtagtactatgatgggtgacctcttgggaagtccttgtgttgcac 12170071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 254 - 331
Target Start/End: Complemental strand, 12189702 - 12189626
Alignment:
Q  254 cgtgtttggccgagagtagtactaggatgggtgacctcctgggaagtccttgtgttgcacttcatccctccatttttt 331  Q
    |||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||| || |||| |||||||||    
T  12189702 cgtgcttgggcgagagtagtactaggatgggtgacctcctgggaagtccttgtgttgcacctc-tcccaccatttttt 12189626  T

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Target: chr4; HSP #7
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 259 - 331
Target Start/End: Complemental strand, 12178978 - 12178907
Alignment:
Q  259 ttggccgagagtagtactaggatgggtgacctcctgggaagtccttgtgttgcacttcatccctccatttttt 331  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||| || |||| |||||||||    
T  12178978 ttgggcgagagtagtactaggatgggtgacctcctgggaagtccttgtgttgcacctc-tcccaccatttttt 12178907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 245 - 313
Target Start/End: Complemental strand, 12180893 - 12180825
Alignment:
Q  245 gcagttaagcgtgtttggccgagagtagtactaggatgggtgacctcctgggaagtccttgtgttgcac 313  Q
    ||||||||||||  |||| |||||||||||||||||||||||||||||||| |||||||||||||||||    
T  12180893 gcagttaagcgttcttgggcgagagtagtactaggatgggtgacctcctggaaagtccttgtgttgcac 12180825  T

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Target: chr4; HSP #9
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 259 - 331
Target Start/End: Complemental strand, 12184362 - 12184291
Alignment:
Q  259 ttggccgagagtagtactaggatgggtgacctcctgggaagtccttgtgttgcacttcatccctccatttttt 331  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||| || |||| |||||||||    
T  12184362 ttgggcgagagtagtactaggatgggtgacctcctgggaagtccttgtgttgcacctc-tcccaccatttttt 12184291  T

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Target: chr4; HSP #10
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 233 - 331
Target Start/End: Complemental strand, 12189380 - 12189282
Alignment:
Q  233 ccatcagaa-tctgcagttaagcgtgtttggccgagagtagtactaggatgggtgacctcctgggaagtccttgtgttgcacttcatccctccatttttt 331  Q
    ||||||||| || ||||||||  ||| |||| |||||||||||||||||||| ||||||||||||||||||||||||||||| || |||| |||||||||    
T  12189380 ccatcagaactccgcagttaattgtgcttgggcgagagtagtactaggatggatgacctcctgggaagtccttgtgttgcacctc-tcccaccatttttt 12189282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 233 - 309
Target Start/End: Complemental strand, 12174210 - 12174133
Alignment:
Q  233 ccatcagaa-tctgcagttaagcgtgtttggccgagagtagtactaggatgggtgacctcctgggaagtccttgtgtt 309  Q
    ||||||||| || ||||||||||||| |||| |||||||||||||||||||| ||||||||||| |||||||||||||    
T  12174210 ccatcagaactccgcagttaagcgtgcttgggcgagagtagtactaggatggatgacctcctggaaagtccttgtgtt 12174133  T

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Target: chr4; HSP #12
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 233 - 309
Target Start/End: Complemental strand, 12178662 - 12178585
Alignment:
Q  233 ccatcagaa-tctgcagttaagcgtgtttggccgagagtagtactaggatgggtgacctcctgggaagtccttgtgtt 309  Q
    ||||||||| || ||||||||||||| |||| |||||||||||||| |||||||| ||||||||||||||||||||||    
T  12178662 ccatcagaactccgcagttaagcgtgcttgggcgagagtagtactatgatgggtgtcctcctgggaagtccttgtgtt 12178585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 233 - 309
Target Start/End: Complemental strand, 12184045 - 12183968
Alignment:
Q  233 ccatcagaa-tctgcagttaagcgtgtttggccgagagtagtactaggatgggtgacctcctgggaagtccttgtgtt 309  Q
    ||||||||| || ||||||| ||||| |||| |||||||||||||||||||||||||||||| |||||||||||||||    
T  12184045 ccatcagaactccgcagttacgcgtgcttggacgagagtagtactaggatgggtgacctccttggaagtccttgtgtt 12183968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 259 - 331
Target Start/End: Complemental strand, 12182458 - 12182387
Alignment:
Q  259 ttggccgagagtagtactaggatgggtgacctcctgggaagtccttgtgttgcacttcatccctccatttttt 331  Q
    |||| ||||||||| |||||||||||||||||||||||||||||||||||||||| || |||| |||||||||    
T  12182458 ttgggcgagagtaggactaggatgggtgacctcctgggaagtccttgtgttgcacctc-tcccaccatttttt 12182387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 233 - 331
Target Start/End: Complemental strand, 12185051 - 12184953
Alignment:
Q  233 ccatcagaa-tctgcagttaagcgtgtttggccgagagtagtactaggatgggtgacctcctgggaagtccttgtgttgcacttcatccctccatttttt 331  Q
    ||||||||| || ||| ||||||||| |||| ||||||||||||||||||||||| |||||||||| |||||| |||||||| || |||| |||||||||    
T  12185051 ccatcagaactcagcaattaagcgtgcttgggcgagagtagtactaggatgggtggcctcctgggaggtccttttgttgcacctc-tcccaccatttttt 12184953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 233 - 331
Target Start/End: Complemental strand, 12185395 - 12185297
Alignment:
Q  233 ccatcagaa-tctgcagttaagcgtgtttggccgagagtagtactaggatgggtgacctcctgggaagtccttgtgttgcacttcatccctccatttttt 331  Q
    ||||||||| || ||| ||||||||| |||| |||||||||||| |||||||||| |||||| ||||||||||||||||||| || |||| |||||||||    
T  12185395 ccatcagaactcagcaattaagcgtgcttgggcgagagtagtacaaggatgggtgtcctcctaggaagtccttgtgttgcacctc-tcccaccatttttt 12185297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 233 - 331
Target Start/End: Complemental strand, 12187043 - 12186945
Alignment:
Q  233 ccatcagaa-tctgcagttaagcgtgtttggccgagagtagtactaggatgggtgacctcctgggaagtccttgtgttgcacttcatccctccatttttt 331  Q
    ||||||||| || ||| ||||||||| |||| ||||||||||||||||||||||| |||||||||| |||||| |||||||| || |||| |||||||||    
T  12187043 ccatcagaactcagcaattaagcgtgcttgggcgagagtagtactaggatgggtggcctcctgggaggtccttttgttgcacctc-tcccaccatttttt 12186945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 233 - 331
Target Start/End: Complemental strand, 12187387 - 12187289
Alignment:
Q  233 ccatcagaa-tctgcagttaagcgtgtttggccgagagtagtactaggatgggtgacctcctgggaagtccttgtgttgcacttcatccctccatttttt 331  Q
    ||||||||| || ||| ||||||||| |||| |||||||||||| |||||||||| |||||| ||||||||||||||||||| || |||| |||||||||    
T  12187387 ccatcagaactcagcaattaagcgtgcttgggcgagagtagtacaaggatgggtgtcctcctaggaagtccttgtgttgcacctc-tcccaccatttttt 12187289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 247 - 313
Target Start/End: Complemental strand, 12169548 - 12169482
Alignment:
Q  247 agttaagcgtgtttggccgagagtagtactaggatgggtgacctcctgggaagtccttgtgttgcac 313  Q
    ||||||||||| |||| |||||||||| ||||||||||||||||  |||||||||||||||||||||    
T  12169548 agttaagcgtgcttgggcgagagtagttctaggatgggtgaccttttgggaagtccttgtgttgcac 12169482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 259 - 313
Target Start/End: Complemental strand, 12172508 - 12172454
Alignment:
Q  259 ttggccgagagtagtactaggatgggtgacctcctgggaagtccttgtgttgcac 313  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  12172508 ttgggcgagagtagtactaggatgggtgacctcctgggaagtccttgtattgcac 12172454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 233 - 306
Target Start/End: Complemental strand, 12172860 - 12172786
Alignment:
Q  233 ccatcagaa-tctgcagttaagcgtgtttggccgagagtagtactaggatgggtgacctcctgggaagtccttgt 306  Q
    ||||||||| || ||||||||||||| |||| |||||||||||||||||||| |||||||||||| |||||||||    
T  12172860 ccatcagaactccgcagttaagcgtgcttgggcgagagtagtactaggatggatgacctcctgggtagtccttgt 12172786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 245 - 307
Target Start/End: Complemental strand, 12173515 - 12173453
Alignment:
Q  245 gcagttaagcgtgtttggccgagagtagtactaggatgggtgacctcctgggaagtccttgtg 307  Q
    |||||||||||||||||| |||||||||||||||||||| ||| |||||||| ||||||||||    
T  12173515 gcagttaagcgtgtttgggcgagagtagtactaggatggatgatctcctgggtagtccttgtg 12173453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 233 - 310
Target Start/End: Complemental strand, 12174876 - 12174798
Alignment:
Q  233 ccatcagaa-tctgcagttaagcgtgtttggccgagagtagtactaggatgggtgacctcctgggaagtccttgtgttg 310  Q
    ||||||||| || ||||||||||||| |||| |||||||||||||||||||| ||| |||||||| |||||||||||||    
T  12174876 ccatcagaactccgcagttaagcgtgcttgggcgagagtagtactaggatggatgatctcctgggtagtccttgtgttg 12174798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 264 - 313
Target Start/End: Complemental strand, 12169216 - 12169167
Alignment:
Q  264 cgagagtagtactaggatgggtgacctcctgggaagtccttgtgttgcac 313  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  12169216 cgagagtagtactaggatgggtgacctcctgggaagtccttgtattgcac 12169167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 245 - 310
Target Start/End: Complemental strand, 12182796 - 12182731
Alignment:
Q  245 gcagttaagcgtgtttggccgagagtagtactaggatgggtgacctcctgggaagtccttgtgttg 310  Q
    ||||||||||||  |||| ||||||||||||| |||||| ||||||||||||||||||||||||||    
T  12182796 gcagttaagcgttcttgggcgagagtagtacttggatggatgacctcctgggaagtccttgtgttg 12182731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 233 - 313
Target Start/End: Complemental strand, 12189037 - 12188956
Alignment:
Q  233 ccatcagaa-tctgcagttaagcgtgtttggccgagagtagtactaggatgggtgacctcctgggaagtccttgtgttgcac 313  Q
    ||||||||| || ||||||||  ||| |||| |||||||||| |||||||||||||||||||||||||| ||||||||||||    
T  12189037 ccatcagaactccgcagttaattgtgcttgggcgagagtagttctaggatgggtgacctcctgggaagttcttgtgttgcac 12188956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 246 - 310
Target Start/End: Complemental strand, 12169843 - 12169779
Alignment:
Q  246 cagttaagcgtgtttggccgagagtagtactaggatgggtgacctcctgggaagtccttgtgttg 310  Q
    |||||||||||| | || |||||||||||||| ||||||||||||||||||||||| ||||||||    
T  12169843 cagttaagcgtgctagggcgagagtagtactatgatgggtgacctcctgggaagtcattgtgttg 12169779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 259 - 331
Target Start/End: Complemental strand, 12173174 - 12173103
Alignment:
Q  259 ttggccgagagtagtactaggatgggtgacctcctgggaagtccttgtgttgcacttcatccctccatttttt 331  Q
    |||| |||||||||||||||||||||||||||||| |||||||||||| |||||| || |||| |||||||||    
T  12173174 ttgggcgagagtagtactaggatgggtgacctcctaggaagtccttgtattgcacatc-tcccaccatttttt 12173103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 232 - 331
Target Start/End: Complemental strand, 12186701 - 12186602
Alignment:
Q  232 tccatcagaa-tctgcagttaagcgtgtttggccgagagtagtactaggatgggtgacctcctgggaagtccttgtgttgcacttcatccctccattttt 330  Q
    |||||||||| || ||| |||| |||| |||| |||||||||||| |||||||||| ||||||| |||||||||||||||||| || |||| ||||||||    
T  12186701 tccatcagaactcagcaattaaccgtgcttgggcgagagtagtacgaggatgggtgtcctcctgagaagtccttgtgttgcacctc-tcccaccattttt 12186603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 232 - 331
Target Start/End: Complemental strand, 12188695 - 12188596
Alignment:
Q  232 tccatcagaa-tctgcagttaagcgtgtttggccgagagtagtactaggatgggtgacctcctgggaagtccttgtgttgcacttcatccctccattttt 330  Q
    |||||||||| || ||| |||| |||| |||| |||||||||||| |||||||||| ||||||| |||||||||||||||||| || |||| ||||||||    
T  12188695 tccatcagaactcagcaattaaccgtgcttgggcgagagtagtacgaggatgggtgtcctcctgagaagtccttgtgttgcacctc-tcccaccattttt 12188597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 246 - 309
Target Start/End: Complemental strand, 12173855 - 12173792
Alignment:
Q  246 cagttaagcgtgtttggccgagagtagtactaggatgggtgacctcctgggaagtccttgtgtt 309  Q
    |||||||||||| |||| || ||||||||||||||||| ||||||||||| |||||||||||||    
T  12173855 cagttaagcgtgcttgggcgggagtagtactaggatggatgacctcctggaaagtccttgtgtt 12173792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 246 - 311
Target Start/End: Complemental strand, 12170726 - 12170661
Alignment:
Q  246 cagttaagcgtgtttggccgagagtagtactaggatgggtgacctcctgggaagtccttgtgttgc 311  Q
    |||||||| ||| | || |||||||||||||| ||||||||||||||||||||||| |||||||||    
T  12170726 cagttaagtgtgctagggcgagagtagtactatgatgggtgacctcctgggaagtcattgtgttgc 12170661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 233 - 309
Target Start/End: Complemental strand, 12175218 - 12175142
Alignment:
Q  233 ccatcagaa-tctgcagttaagcgtgtttggccgagagtagtactaggatgggtgacctcctgggaagtccttgtgtt 309  Q
    ||||||||| || ||||||||||||| |||| || ||||||||||||||||| ||| |||||||||||||||||||||    
T  12175218 ccatcagaactccgcagttaagcgtgcttgggcgggagtagtactaggatggatga-ctcctgggaagtccttgtgtt 12175142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 245 - 310
Target Start/End: Complemental strand, 12179316 - 12179251
Alignment:
Q  245 gcagttaagcgtgtttggccgagagtagtactaggatgggtgacctcctgggaagtccttgtgttg 310  Q
    ||||||||||||  |||| |||||||||||||  ||||| ||||||||||||||||||||||||||    
T  12179316 gcagttaagcgttcttgggcgagagtagtactttgatggatgacctcctgggaagtccttgtgttg 12179251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 259 - 331
Target Start/End: Complemental strand, 12174524 - 12174453
Alignment:
Q  259 ttggccgagagtagtactaggatgggtgacctcctgggaagtccttgtgttgcacttcatccctccatttttt 331  Q
    |||| ||||||||||||||||||||||||| |||| |||||||||||| |||||| || |||| |||||||||    
T  12174524 ttgggcgagagtagtactaggatgggtgacgtcctaggaagtccttgtattgcacatc-tcccaccatttttt 12174453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 233 - 311
Target Start/End: Complemental strand, 12170446 - 12170367
Alignment:
Q  233 ccatcagaa-tctgcagttaagcgtgtttggccgagagtagtactaggatgggtgacctcctgggaagtccttgtgttgc 311  Q
    ||||||||| || ||||||||| ||| | || |||||||||||||| ||||||||||||||| ||||||| |||||||||    
T  12170446 ccatcagaactccgcagttaagggtgctagggcgagagtagtactatgatgggtgacctcctaggaagtcattgtgttgc 12170367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #37
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 234 - 318
Target Start/End: Complemental strand, 4375062 - 4374977
Alignment:
Q  234 catcagaa-tctgcagttaagcgtgtttggccgagagtagtactaggatgggtgacctcctgggaagtccttgtgttgcacttcat 318  Q
    |||||||| ||||||||||||| || |||  ||||||||||| ||||||| ||||| |||| |||| |||||||||||||| ||||    
T  4375062 catcagaactctgcagttaagcatgcttgtgcgagagtagtaataggatgtgtgacttcctaggaaatccttgtgttgcacctcat 4374977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #38
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 249 - 331
Target Start/End: Complemental strand, 12177067 - 12176984
Alignment:
Q  249 ttaagcgtgtttggccgagagtagtactaggatgggtgacctc--ctgggaagtccttgtgttgcacttcatccctccatttttt 331  Q
    ||||||||| |||| ||||||||||||||||||||||||||||    ||||||||||| |||||||| || |||| |||||||||    
T  12177067 ttaagcgtgcttggacgagagtagtactaggatgggtgacctctagggggaagtccttttgttgcacctc-tcccaccatttttt 12176984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #39
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 220 - 291
Target Start/End: Complemental strand, 12186370 - 12186297
Alignment:
Q  220 taatgcactagatcc-atcagaa-tctgcagttaagcgtgtttggccgagagtagtactaggatgggtgacctc 291  Q
    |||||||| |||||| ||||||| || ||| ||||||||| |||| ||||||||||||||||||||||| ||||    
T  12186370 taatgcaccagatcccatcagaactcagcaattaagcgtgcttgggcgagagtagtactaggatgggtgtcctc 12186297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #40
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 220 - 291
Target Start/End: Complemental strand, 12188364 - 12188291
Alignment:
Q  220 taatgcactagatcc-atcagaa-tctgcagttaagcgtgtttggccgagagtagtactaggatgggtgacctc 291  Q
    |||||||| |||||| ||||||| || ||| ||||||||| |||| ||||||||||||||||||||||| ||||    
T  12188364 taatgcaccagatcccatcagaactcagcaattaagcgtgcttgggcgagagtagtactaggatgggtgtcctc 12188291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #41
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 264 - 331
Target Start/End: Complemental strand, 12171052 - 12170986
Alignment:
Q  264 cgagagtagtactaggatgggtgacctcctgggaagtccttgtgttgcacttcatccctccatttttt 331  Q
    ||||| || |||||||| |||||||||||| ||||||||||  ||||||| || ||||||||||||||    
T  12171052 cgagaataatactaggacgggtgacctcctaggaagtcctttagttgcacctc-tccctccatttttt 12170986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 62; Significance: 1e-26; HSPs: 52)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 233 - 313
Target Start/End: Complemental strand, 24621778 - 24621697
Alignment:
Q  233 ccatcagaa-tctgcagttaagcgtgtttggccgagagtagtactaggatgggtgacctcctgggaagtccttgtgttgcac 313  Q
    ||||||||| || ||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24621778 ccatcagaactccgcagttaagcgtgcttgggcgagagtagtactaggatgggtgacctcctgggaagtccttgtgttgcac 24621697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 233 - 313
Target Start/End: Complemental strand, 24622097 - 24622016
Alignment:
Q  233 ccatcagaa-tctgcagttaagcgtgtttggccgagagtagtactaggatgggtgacctcctgggaagtccttgtgttgcac 313  Q
    ||||||||| || ||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24622097 ccatcagaactccgcagttaagcgtgcttgggcgagagtagtactaggatgggtgacctcctgggaagtccttgtgttgcac 24622016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 233 - 313
Target Start/End: Complemental strand, 24622416 - 24622335
Alignment:
Q  233 ccatcagaa-tctgcagttaagcgtgtttggccgagagtagtactaggatgggtgacctcctgggaagtccttgtgttgcac 313  Q
    ||||||||| || ||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24622416 ccatcagaactccgcagttaagcgtgcttgggcgagagtagtactaggatgggtgacctcctgggaagtccttgtgttgcac 24622335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 233 - 313
Target Start/End: Complemental strand, 24622700 - 24622619
Alignment:
Q  233 ccatcagaa-tctgcagttaagcgtgtttggccgagagtagtactaggatgggtgacctcctgggaagtccttgtgttgcac 313  Q
    ||||||||| || ||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24622700 ccatcagaactccgcagttaagcgtgcttgggcgagagtagtactaggatgggtgacctcctgggaagtccttgtgttgcac 24622619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 233 - 313
Target Start/End: Complemental strand, 24622984 - 24622903
Alignment:
Q  233 ccatcagaa-tctgcagttaagcgtgtttggccgagagtagtactaggatgggtgacctcctgggaagtccttgtgttgcac 313  Q
    ||||||||| || ||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24622984 ccatcagaactccgcagttaagcgtgcttgggcgagagtagtactaggatgggtgacctcctgggaagtccttgtgttgcac 24622903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 233 - 313
Target Start/End: Complemental strand, 24623587 - 24623506
Alignment:
Q  233 ccatcagaa-tctgcagttaagcgtgtttggccgagagtagtactaggatgggtgacctcctgggaagtccttgtgttgcac 313  Q
    ||||||||| || ||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24623587 ccatcagaactccgcagttaagcgtgcttgggcgagagtagtactaggatgggtgacctcctgggaagtccttgtgttgcac 24623506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 233 - 313
Target Start/End: Complemental strand, 24623906 - 24623825
Alignment:
Q  233 ccatcagaa-tctgcagttaagcgtgtttggccgagagtagtactaggatgggtgacctcctgggaagtccttgtgttgcac 313  Q
    ||||||||| || ||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24623906 ccatcagaactccgcagttaagcgtgcttgggcgagagtagtactaggatgggtgacctcctgggaagtccttgtgttgcac 24623825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 233 - 313
Target Start/End: Complemental strand, 24624499 - 24624418
Alignment:
Q  233 ccatcagaa-tctgcagttaagcgtgtttggccgagagtagtactaggatgggtgacctcctgggaagtccttgtgttgcac 313  Q
    ||||||||| || ||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24624499 ccatcagaactccgcagttaagcgtgcttgggcgagagtagtactaggatgggtgacctcctgggaagtccttgtgttgcac 24624418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 233 - 313
Target Start/End: Complemental strand, 24624818 - 24624737
Alignment:
Q  233 ccatcagaa-tctgcagttaagcgtgtttggccgagagtagtactaggatgggtgacctcctgggaagtccttgtgttgcac 313  Q
    ||||||||| || ||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24624818 ccatcagaactccgcagttaagcgtgcttgggcgagagtagtactaggatgggtgacctcctgggaagtccttgtgttgcac 24624737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 233 - 313
Target Start/End: Complemental strand, 24625102 - 24625021
Alignment:
Q  233 ccatcagaa-tctgcagttaagcgtgtttggccgagagtagtactaggatgggtgacctcctgggaagtccttgtgttgcac 313  Q
    ||||||||| || ||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24625102 ccatcagaactccgcagttaagcgtgcttgggcgagagtagtactaggatgggtgacctcctgggaagtccttgtgttgcac 24625021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 233 - 313
Target Start/End: Complemental strand, 24625421 - 24625340
Alignment:
Q  233 ccatcagaa-tctgcagttaagcgtgtttggccgagagtagtactaggatgggtgacctcctgggaagtccttgtgttgcac 313  Q
    ||||||||| || ||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24625421 ccatcagaactccgcagttaagcgtgcttgggcgagagtagtactaggatgggtgacctcctgggaagtccttgtgttgcac 24625340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 233 - 313
Target Start/End: Complemental strand, 24626994 - 24626913
Alignment:
Q  233 ccatcagaa-tctgcagttaagcgtgtttggccgagagtagtactaggatgggtgacctcctgggaagtccttgtgttgcac 313  Q
    ||||||||| || ||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24626994 ccatcagaactccgcagttaagcgtgcttgggcgagagtagtactaggatgggtgacctcctgggaagtccttgtgttgcac 24626913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 233 - 313
Target Start/End: Complemental strand, 24631480 - 24631399
Alignment:
Q  233 ccatcagaa-tctgcagttaagcgtgtttggccgagagtagtactaggatgggtgacctcctgggaagtccttgtgttgcac 313  Q
    ||||||||| || ||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24631480 ccatcagaactccgcagttaagcgtgcttgggcgagagtagtactaggatgggtgacctcctgggaagtccttgtgttgcac 24631399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 233 - 313
Target Start/End: Complemental strand, 24631799 - 24631718
Alignment:
Q  233 ccatcagaa-tctgcagttaagcgtgtttggccgagagtagtactaggatgggtgacctcctgggaagtccttgtgttgcac 313  Q
    ||||||||| || ||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24631799 ccatcagaactccgcagttaagcgtgcttgggcgagagtagtactaggatgggtgacctcctgggaagtccttgtgttgcac 24631718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 233 - 313
Target Start/End: Complemental strand, 24632083 - 24632002
Alignment:
Q  233 ccatcagaa-tctgcagttaagcgtgtttggccgagagtagtactaggatgggtgacctcctgggaagtccttgtgttgcac 313  Q
    ||||||||| || ||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24632083 ccatcagaactccgcagttaagcgtgcttgggcgagagtagtactaggatgggtgacctcctgggaagtccttgtgttgcac 24632002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 233 - 313
Target Start/End: Complemental strand, 24632367 - 24632286
Alignment:
Q  233 ccatcagaa-tctgcagttaagcgtgtttggccgagagtagtactaggatgggtgacctcctgggaagtccttgtgttgcac 313  Q
    ||||||||| || ||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24632367 ccatcagaactccgcagttaagcgtgcttgggcgagagtagtactaggatgggtgacctcctgggaagtccttgtgttgcac 24632286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 233 - 313
Target Start/End: Complemental strand, 24632686 - 24632605
Alignment:
Q  233 ccatcagaa-tctgcagttaagcgtgtttggccgagagtagtactaggatgggtgacctcctgggaagtccttgtgttgcac 313  Q
    ||||||||| || ||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24632686 ccatcagaactccgcagttaagcgtgcttgggcgagagtagtactaggatgggtgacctcctgggaagtccttgtgttgcac 24632605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 233 - 313
Target Start/End: Complemental strand, 24632970 - 24632889
Alignment:
Q  233 ccatcagaa-tctgcagttaagcgtgtttggccgagagtagtactaggatgggtgacctcctgggaagtccttgtgttgcac 313  Q
    ||||||||| || ||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24632970 ccatcagaactccgcagttaagcgtgcttgggcgagagtagtactaggatgggtgacctcctgggaagtccttgtgttgcac 24632889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 233 - 313
Target Start/End: Complemental strand, 24633254 - 24633173
Alignment:
Q  233 ccatcagaa-tctgcagttaagcgtgtttggccgagagtagtactaggatgggtgacctcctgggaagtccttgtgttgcac 313  Q
    ||||||||| || ||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24633254 ccatcagaactccgcagttaagcgtgcttgggcgagagtagtactaggatgggtgacctcctgggaagtccttgtgttgcac 24633173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 233 - 313
Target Start/End: Complemental strand, 24633573 - 24633492
Alignment:
Q  233 ccatcagaa-tctgcagttaagcgtgtttggccgagagtagtactaggatgggtgacctcctgggaagtccttgtgttgcac 313  Q
    ||||||||| || ||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24633573 ccatcagaactccgcagttaagcgtgcttgggcgagagtagtactaggatgggtgacctcctgggaagtccttgtgttgcac 24633492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 233 - 313
Target Start/End: Complemental strand, 24633892 - 24633811
Alignment:
Q  233 ccatcagaa-tctgcagttaagcgtgtttggccgagagtagtactaggatgggtgacctcctgggaagtccttgtgttgcac 313  Q
    ||||||||| || ||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24633892 ccatcagaactccgcagttaagcgtgcttgggcgagagtagtactaggatgggtgacctcctgggaagtccttgtgttgcac 24633811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 233 - 313
Target Start/End: Complemental strand, 24634176 - 24634095
Alignment:
Q  233 ccatcagaa-tctgcagttaagcgtgtttggccgagagtagtactaggatgggtgacctcctgggaagtccttgtgttgcac 313  Q
    ||||||||| || ||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24634176 ccatcagaactccgcagttaagcgtgcttgggcgagagtagtactaggatgggtgacctcctgggaagtccttgtgttgcac 24634095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 233 - 313
Target Start/End: Complemental strand, 24634779 - 24634698
Alignment:
Q  233 ccatcagaa-tctgcagttaagcgtgtttggccgagagtagtactaggatgggtgacctcctgggaagtccttgtgttgcac 313  Q
    ||||||||| || ||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24634779 ccatcagaactccgcagttaagcgtgcttgggcgagagtagtactaggatgggtgacctcctgggaagtccttgtgttgcac 24634698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 233 - 313
Target Start/End: Complemental strand, 24638858 - 24638777
Alignment:
Q  233 ccatcagaa-tctgcagttaagcgtgtttggccgagagtagtactaggatgggtgacctcctgggaagtccttgtgttgcac 313  Q
    ||||||||| || ||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24638858 ccatcagaactccgcagttaagcgtgcttgggcgagagtagtactaggatgggtgacctcctgggaagtccttgtgttgcac 24638777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 233 - 313
Target Start/End: Complemental strand, 24639177 - 24639096
Alignment:
Q  233 ccatcagaa-tctgcagttaagcgtgtttggccgagagtagtactaggatgggtgacctcctgggaagtccttgtgttgcac 313  Q
    ||||||||| || ||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24639177 ccatcagaactccgcagttaagcgtgcttgggcgagagtagtactaggatgggtgacctcctgggaagtccttgtgttgcac 24639096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 233 - 313
Target Start/End: Complemental strand, 24623303 - 24623222
Alignment:
Q  233 ccatcagaa-tctgcagttaagcgtgtttggccgagagtagtactaggatgggtgacctcctgggaagtccttgtgttgcac 313  Q
    ||||||||| || ||||||||||||| |||| |||||||||| |||||||||||||||||||||||||||||||||||||||    
T  24623303 ccatcagaactccgcagttaagcgtgcttgggcgagagtagtnctaggatgggtgacctcctgggaagtccttgtgttgcac 24623222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 233 - 313
Target Start/End: Complemental strand, 24627313 - 24627232
Alignment:
Q  233 ccatcagaa-tctgcagttaagcgtgtttggccgagagtagtactaggatgggtgacctcctgggaagtccttgtgttgcac 313  Q
    ||||||||| || ||||||||||||| |||| |||||||||| |||||||||||||||||||||||||||||||||||||||    
T  24627313 ccatcagaactccgcagttaagcgtgcttgggcgagagtagtnctaggatgggtgacctcctgggaagtccttgtgttgcac 24627232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 233 - 313
Target Start/End: Complemental strand, 24627597 - 24627516
Alignment:
Q  233 ccatcagaa-tctgcagttaagcgtgtttggccgagagtagtactaggatgggtgacctcctgggaagtccttgtgttgcac 313  Q
    ||||||||| || ||||||||||||| |||| |||||||||||||||||||||||||||||||||||||| |||||||||||    
T  24627597 ccatcagaactccgcagttaagcgtgcttgggcgagagtagtactaggatgggtgacctcctgggaagtcnttgtgttgcac 24627516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 233 - 313
Target Start/End: Complemental strand, 24631196 - 24631115
Alignment:
Q  233 ccatcagaa-tctgcagttaagcgtgtttggccgagagtagtactaggatgggtgacctcctgggaagtccttgtgttgcac 313  Q
    ||||||||| || ||||||||||||| |||| |||||||||||||||||||||||||||| |||||||||||||||||||||    
T  24631196 ccatcagaactccgcagttaagcgtgcttgggcgagagtagtactaggatgggtgacctcntgggaagtccttgtgttgcac 24631115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 233 - 313
Target Start/End: Complemental strand, 3348145 - 3348064
Alignment:
Q  233 ccatcagaa-tctgcagttaagcgtgtttggccgagagtagtactaggatgggtgacctcctgggaagtccttgtgttgcac 313  Q
    ||||||||| || ||||||||||||| |||| |||||||||||||||||||||||||||||| |||||||||||||||||||    
T  3348145 ccatcagaactccgcagttaagcgtgcttggacgagagtagtactaggatgggtgacctcctaggaagtccttgtgttgcac 3348064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #31
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 233 - 313
Target Start/End: Complemental strand, 24626063 - 24625982
Alignment:
Q  233 ccatcagaa-tctgcagttaagcgtgtttggccgagagtagtactaggatgggtgacctcctgggaagtccttgtgttgcac 313  Q
    ||||||||| || ||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  24626063 ccatcagaactccgcagttaagcgtgcttgggcgagagtagtactaggatgggtgacctcctgggaagtccttgttttgcac 24625982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #32
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 233 - 313
Target Start/End: Complemental strand, 24634495 - 24634414
Alignment:
Q  233 ccatcagaa-tctgcagttaagcgtgtttggccgagagtagtactaggatgggtgacctcctgggaagtccttgtgttgcac 313  Q
    ||||||||| || ||||||||||||| |||| |||||||||| |||||||||||||||||||||||||||||||||||||||    
T  24634495 ccatcagaactccgcagttaagcgtgcttgggcgagagtagtgctaggatgggtgacctcctgggaagtccttgtgttgcac 24634414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #33
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 233 - 313
Target Start/End: Complemental strand, 24638539 - 24638458
Alignment:
Q  233 ccatcagaa-tctgcagttaagcgtgtttggccgagagtagtactaggatgggtgacctcctgggaagtccttgtgttgcac 313  Q
    ||||||||| || ||||||||||||| |||| |||||||||| |||||||||||||||||||||||||||||||||||||||    
T  24638539 ccatcagaactccgcagttaagcgtgcttgggcgagagtagtgctaggatgggtgacctcctgggaagtccttgtgttgcac 24638458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #34
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 261 - 313
Target Start/End: Complemental strand, 24626354 - 24626302
Alignment:
Q  261 ggccgagagtagtactaggatgggtgacctcctgggaagtccttgtgttgcac 313  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24626354 ggccgagagtagtactaggatgggtgacctcctgggaagtccttgtgttgcac 24626302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #35
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 233 - 313
Target Start/End: Complemental strand, 24620848 - 24620764
Alignment:
Q  233 ccatcagaa-tctgcagttaagcgtgtttggccgagagtagtactag---gatgggtgacctcctgggaagtccttgtgttgcac 313  Q
    ||||||||| || ||||||||||||| |||| |||||||||||||||   |||||||||||||||||||||||||||||||||||    
T  24620848 ccatcagaactccgcagttaagcgtgcttgggcgagagtagtactagntggatgggtgacctcctgggaagtccttgtgttgcac 24620764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #36
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 245 - 313
Target Start/End: Complemental strand, 24619687 - 24619616
Alignment:
Q  245 gcagttaagcgtgtttggccgagagtagtactag---gatgggtgacctcctgggaagtccttgtgttgcac 313  Q
    ||||||||||||| |||| |||||||||||||||   |||||||||||||||||||||||||||||||||||    
T  24619687 gcagttaagcgtgcttgggcgagagtagtactagntggatgggtgacctcctgggaagtccttgtgttgcac 24619616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #37
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 233 - 313
Target Start/End: Complemental strand, 24621171 - 24621086
Alignment:
Q  233 ccatcagaa-tctgcagttaagcgtgtttggccgagagtagtactaggatgg----gtgacctcctgggaagtccttgtgttgcac 313  Q
    ||||||||| || ||||||||||||| |||| ||||||||||||||||||||    ||||||||||||||||||||||||||||||    
T  24621171 ccatcagaactccgcagttaagcgtgcttgggcgagagtagtactaggatggatgggtgacctcctgggaagtccttgtgttgcac 24621086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #38
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 233 - 313
Target Start/End: Complemental strand, 24621494 - 24621409
Alignment:
Q  233 ccatcagaa-tctgcagttaagcgtgtttggccgagagtagtactagg----atgggtgacctcctgggaagtccttgtgttgcac 313  Q
    ||||||||| || ||||||||||||| |||| ||||||||||||||||    ||||||||||||||||||||||||||||||||||    
T  24621494 ccatcagaactccgcagttaagcgtgcttgggcgagagtagtactaggnnggatgggtgacctcctgggaagtccttgtgttgcac 24621409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #39
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 233 - 313
Target Start/End: Complemental strand, 24625744 - 24625659
Alignment:
Q  233 ccatcagaa-tctgcagttaagcgtgtttggccgagagtagtactagg----atgggtgacctcctgggaagtccttgtgttgcac 313  Q
    ||||||||| || ||||||||||||| |||| ||||||||||||||||    ||||||||||||||||||||||||||||||||||    
T  24625744 ccatcagaactccgcagttaagcgtgcttgggcgagagtagtactaggntggatgggtgacctcctgggaagtccttgtgttgcac 24625659  T

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Target: chr2; HSP #40
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 233 - 313
Target Start/End: Complemental strand, 24626710 - 24626625
Alignment:
Q  233 ccatcagaa-tctgcagttaagcgtgtttggccgagagtagtactagg----atgggtgacctcctgggaagtccttgtgttgcac 313  Q
    ||||||||| || ||||||||||||| |||| ||||||||||||||||    ||||||||||||||||||||||||||||||||||    
T  24626710 ccatcagaactccgcagttaagcgtgcttgggcgagagtagtactaggtaggatgggtgacctcctgggaagtccttgtgttgcac 24626625  T

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Target: chr2; HSP #41
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 233 - 313
Target Start/End: Complemental strand, 24635654 - 24635569
Alignment:
Q  233 ccatcagaa-tctgcagttaagcgtgtttggccgagagtagtactaggatgg----gtgacctcctgggaagtccttgtgttgcac 313  Q
    ||||||||| || ||||||||||||| |||| ||||||||||||||||||||    ||||||||||||||||||||||||||||||    
T  24635654 ccatcagaactccgcagttaagcgtgcttgggcgagagtagtactaggatggatgggtgacctcctgggaagtccttgtgttgcac 24635569  T

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Target: chr2; HSP #42
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 233 - 313
Target Start/End: Complemental strand, 24636355 - 24636270
Alignment:
Q  233 ccatcagaa-tctgcagttaagcgtgtttggccgagagtagtactaggatgg----gtgacctcctgggaagtccttgtgttgcac 313  Q
    ||||||||| || ||||||||||||| |||| ||||||||||||||||||||    ||||||||||||||||||||||||||||||    
T  24636355 ccatcagaactccgcagttaagcgtgcttgggcgagagtagtactaggatggatgggtgacctcctgggaagtccttgtgttgcac 24636270  T

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Target: chr2; HSP #43
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 233 - 313
Target Start/End: Complemental strand, 24636678 - 24636593
Alignment:
Q  233 ccatcagaa-tctgcagttaagcgtgtttggccgagagtagtactaggatgg----gtgacctcctgggaagtccttgtgttgcac 313  Q
    ||||||||| || ||||||||||||| |||| ||||||||||||||||||||    ||||||||||||||||||||||||||||||    
T  24636678 ccatcagaactccgcagttaagcgtgcttgggcgagagtagtactaggatggatgggtgacctcctgggaagtccttgtgttgcac 24636593  T

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Target: chr2; HSP #44
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 233 - 313
Target Start/End: Complemental strand, 24637603 - 24637518
Alignment:
Q  233 ccatcagaa-tctgcagttaagcgtgtttggccgagagtagtactagg----atgggtgacctcctgggaagtccttgtgttgcac 313  Q
    ||||||||| || ||||||||||||| |||| ||||||||||||||||    ||||||||||||||||||||||||||||||||||    
T  24637603 ccatcagaactccgcagttaagcgtgcttgggcgagagtagtactaggtaggatgggtgacctcctgggaagtccttgtgttgcac 24637518  T

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Target: chr2; HSP #45
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 261 - 313
Target Start/End: Complemental strand, 24637893 - 24637841
Alignment:
Q  261 ggccgagagtagtactaggatgggtgacctcctgggaagtccttgtgttgcac 313  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  24637893 ggccgagagtagtactaggatgggtgacctcctgggaagtccttgttttgcac 24637841  T

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Target: chr2; HSP #46
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 233 - 313
Target Start/End: Complemental strand, 24639530 - 24639445
Alignment:
Q  233 ccatcagaa-tctgcagttaagcgtgtttggccgagagtagtactaggatgg----gtgacctcctgggaagtccttgtgttgcac 313  Q
    ||||||||| || ||||||||||||| |||| ||||||||||||||||||||    ||||||||||||||||||||||||||||||    
T  24639530 ccatcagaactccgcagttaagcgtgcttgggcgagagtagtactaggatggatgggtgacctcctgggaagtccttgtgttgcac 24639445  T

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Target: chr2; HSP #47
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 233 - 313
Target Start/End: Complemental strand, 24639853 - 24639768
Alignment:
Q  233 ccatcagaa-tctgcagttaagcgtgtttggccgagagtagtactagg----atgggtgacctcctgggaagtccttgtgttgcac 313  Q
    ||||||||| || ||||||||||||| |||| ||||||||||||||||    ||||||||||||||||||||||||||||||||||    
T  24639853 ccatcagaactccgcagttaagcgtgcttgggcgagagtagtactaggnnggatgggtgacctcctgggaagtccttgtgttgcac 24639768  T

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Target: chr2; HSP #48
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 233 - 313
Target Start/End: Complemental strand, 24640176 - 24640091
Alignment:
Q  233 ccatcagaa-tctgcagttaagcgtgtttggccgagagtagtactaggatgg----gtgacctcctgggaagtccttgtgttgcac 313  Q
    ||||||||| || ||||||||||||| |||| ||||||||||||||||||||    ||||||||||||||||||||||||||||||    
T  24640176 ccatcagaactccgcagttaagcgtgcttgggcgagagtagtactaggatggatgggtgacctcctgggaagtccttgtgttgcac 24640091  T

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Target: chr2; HSP #49
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 233 - 313
Target Start/End: Complemental strand, 24635331 - 24635246
Alignment:
Q  233 ccatcagaa-tctgcagttaagcgtgtttggccgagagtagtactaggatgg----gtgacctcctgggaagtccttgtgttgcac 313  Q
    ||||||||| || ||||||||||||| |||| ||||||||||||||||||||    ||||||||| ||||||||||||||||||||    
T  24635331 ccatcagaactccgcagttaagcgtgcttgggcgagagtagtactaggatggatgggtgacctccngggaagtccttgtgttgcac 24635246  T

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Target: chr2; HSP #50
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 233 - 313
Target Start/End: Complemental strand, 24637001 - 24636916
Alignment:
Q  233 ccatcagaa-tctgcagttaagcgtgtttggccgagagtagtactaggatgg----gtgacctcctgggaagtccttgtgttgcac 313  Q
    ||||||||| || ||||||||||||| |||| ||||||||||||||||||||    ||||||||| ||||||||||||||||||||    
T  24637001 ccatcagaactccgcagttaagcgtgcttgggcgagagtagtactaggatggatgggtgacctccagggaagtccttgtgttgcac 24636916  T

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Target: chr2; HSP #51
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 233 - 287
Target Start/End: Complemental strand, 24630912 - 24630857
Alignment:
Q  233 ccatcagaa-tctgcagttaagcgtgtttggccgagagtagtactaggatgggtga 287  Q
    ||||||||| || ||||||||||||| |||| ||||||||||||||||||||||||    
T  24630912 ccatcagaactccgcagttaagcgtgcttgggcgagagtagtactaggatgggtga 24630857  T

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Target: chr2; HSP #52
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 243 - 293
Target Start/End: Complemental strand, 38802380 - 38802330
Alignment:
Q  243 ctgcagttaagcgtgtttggccgagagtagtactaggatgggtgacctcct 293  Q
    |||||||||||||||||||| | ||||||||| ||| |||| |||||||||    
T  38802380 ctgcagttaagcgtgtttggacaagagtagtaatagtatggatgacctcct 38802330  T

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Target: scaffold1024 (Bit Score: 58; Significance: 4e-24; HSPs: 1)
Name: scaffold1024
Description:

Target: scaffold1024; HSP #1
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 233 - 313
Target Start/End: Original strand, 27 - 108
Alignment:
Q  233 ccatcagaa-tctgcagttaagcgtgtttggccgagagtagtactaggatgggtgacctcctgggaagtccttgtgttgcac 313  Q
    ||||||||| || ||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  27 ccatcagaactccgcagttaagcgtgcttgggcgagagtagtactaggatgggtgacctcctgggaagtccgtgtgttgcac 108  T

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Target: chr3 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 259 - 313
Target Start/End: Original strand, 14903159 - 14903213
Alignment:
Q  259 ttggccgagagtagtactaggatgggtgacctcctgggaagtccttgtgttgcac 313  Q
    |||| |||||||||||||||||||||||||||||||  |||||||||||||||||    
T  14903159 ttgggcgagagtagtactaggatgggtgacctcctgaaaagtccttgtgttgcac 14903213  T

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Target: chr3; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 233 - 309
Target Start/End: Original strand, 16990067 - 16990144
Alignment:
Q  233 ccatcagaa-tctgcagttaagcgtgtttggccgagagtagtactaggatgggtgacctcctgggaagtccttgtgtt 309  Q
    ||||||||| || |||||||| |||| |||| ||||||||||||||||||| |||||||  |||||||||||||||||    
T  16990067 ccatcagaactccgcagttaaacgtgcttgggcgagagtagtactaggatgagtgacctattgggaagtccttgtgtt 16990144  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 245 - 313
Target Start/End: Original strand, 3732693 - 3732761
Alignment:
Q  245 gcagttaagcgtgtttggccgagagtagtactaggatgggtgacctcctgggaagtccttgtgttgcac 313  Q
    ||||||||||||  |||| ||| ||||||||||  |||||||||||| |   |||||||||||||||||    
T  3732693 gcagttaagcgtacttgggcgaaagtagtactaaaatgggtgacctcttcaaaagtccttgtgttgcac 3732761  T

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Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 246 - 314
Target Start/End: Complemental strand, 30729485 - 30729417
Alignment:
Q  246 cagttaagcgtgtttggccgagagtagtactaggatgggtgacctcctgggaagtccttgtgttgcact 314  Q
    ||||||| |||| |||  ||||||||| | ||||||||||||||| |||  ||||| ||||||||||||    
T  30729485 cagttaaacgtgcttgaacgagagtagcattaggatgggtgaccttctgaaaagtcattgtgttgcact 30729417  T

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Target: chr8 (Bit Score: 36; Significance: 0.00000000005; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 265 - 312
Target Start/End: Original strand, 13642504 - 13642551
Alignment:
Q  265 gagagtagtactaggatgggtgacctcctgggaagtccttgtgttgca 312  Q
    ||||||||||||| ||||||||||||| |||||| |||||||||||||    
T  13642504 gagagtagtactaagatgggtgacctcatgggaaatccttgtgttgca 13642551  T

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Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 265 - 312
Target Start/End: Original strand, 13742916 - 13742963
Alignment:
Q  265 gagagtagtactaggatgggtgacctcctgggaagtccttgtgttgca 312  Q
    ||||||||||||| ||||||||||||| ||||||||||| ||||||||    
T  13742916 gagagtagtactaagatgggtgacctcatgggaagtcctcgtgttgca 13742963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 266 - 313
Target Start/End: Complemental strand, 15246388 - 15246341
Alignment:
Q  266 agagtagtactaggatgggtgacctcctgggaagtccttgtgttgcac 313  Q
    |||| ||||||||||| ||||||||||||  |||||||||||||||||    
T  15246388 agagcagtactaggataggtgacctcctgaaaagtccttgtgttgcac 15246341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 233 - 293
Target Start/End: Original strand, 44836736 - 44836797
Alignment:
Q  233 ccatcagaatct-gcagttaagcgtgtttggccgagagtagtactaggatgggtgacctcct 293  Q
    |||||||||| | |||||||| | ||||||| ||||||| ||| ||||||||||||||||||    
T  44836736 ccatcagaatttcgcagttaaacatgtttgggcgagagttgtattaggatgggtgacctcct 44836797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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