View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12273_high_12 (Length: 241)
Name: NF12273_high_12
Description: NF12273
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12273_high_12 |
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Alignment Details
Target: chr8 (Bit Score: 215; Significance: 1e-118; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 1 - 223
Target Start/End: Complemental strand, 38624842 - 38624620
Alignment:
| Q |
1 |
ttgtggaaaaaacatattgcaagaatgaaggcagcctacagtagacccacaaaatggtgtaaagcctttcttaaaccatgtcatgacaggagctttgtag |
100 |
Q |
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| T |
38624842 |
ttgtggaaaaaacatattgcaagaatgaaggcagcctacagtagacccacaaaatggtgtaaagcctttcttaaaccatgtcatgacaggagctttgtag |
38624743 |
T |
|
| Q |
101 |
cgccaggtttccctttacacataattcaaatgaacaggacttcaccacaaagcagcataaatataaatgacaattgataggaattgcaatgtttacaatc |
200 |
Q |
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| T |
38624742 |
cgccaggtttccctttacacataattcaaatgaacaggactccacaacaaagcagcataaatataaatgacaattgataggaattgcaatgtttacaatc |
38624643 |
T |
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| Q |
201 |
taaaatgaaaataatagacttga |
223 |
Q |
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| T |
38624642 |
taaaatgaaaataatagacttga |
38624620 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 16 - 173
Target Start/End: Complemental strand, 38649958 - 38649789
Alignment:
| Q |
16 |
attgcaagaatgaaggcagcctacagtagacccacaa-aatggtgtaaa-------gcctttcttaaaccatgtcatgacaggagctttgtagcgccagg |
107 |
Q |
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| T |
38649958 |
attgcaagagtgaaggctgcctacagtagacccacaacaatggtttaaactttaaagcctttcttaaaccatgtcatgacaggagttttgtagcgccagg |
38649859 |
T |
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| Q |
108 |
tttccctttac----acataattcaaatgaacaggacttcaccacaaagcagcataaatataaatgacaa |
173 |
Q |
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| T |
38649858 |
ttgcccttcacacgtacataattcaaatgaacaggactctacgacaaagcagcataaatataaatgacaa |
38649789 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 147 - 186
Target Start/End: Complemental strand, 38649792 - 38649753
Alignment:
| Q |
147 |
acaaagcagcataaatataaatgacaattgataggaattg |
186 |
Q |
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||||||||||||||||||||||||||||||| | |||||| |
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| T |
38649792 |
acaaagcagcataaatataaatgacaattgacaagaattg |
38649753 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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