View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12273_high_6 (Length: 394)
Name: NF12273_high_6
Description: NF12273
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12273_high_6 |
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Alignment Details
Target: chr7 (Bit Score: 280; Significance: 1e-157; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 280; E-Value: 1e-157
Query Start/End: Original strand, 61 - 381
Target Start/End: Original strand, 3929628 - 3929947
Alignment:
| Q |
61 |
atatccatagacaacttcgatattaaaattgaagcaaaatttcccaacttcaaagctaaaaagcaacaaattagttactatgatcaaattttcatcaaat |
160 |
Q |
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| T |
3929628 |
atatccatagacaacttcaatattaaaattgaagcaaaatttcccaacgtcaaagctaaaaagcaacaaattagttactatgatcgaattttcatcaaat |
3929727 |
T |
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| Q |
161 |
caagttaaacaaaattgaaaattagtttgaacaattaaatgcaatcaatttgattaagtatcatagattcaacagatcaattcaaaattcaagattcact |
260 |
Q |
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| T |
3929728 |
caagttaaacaaaattgaaaattagtttgaacaattaaatgcaatcaatttgattaagtatcatagattcaacagatcaattcaaaattcaagattcact |
3929827 |
T |
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| Q |
261 |
ttttccaagagaaattagattcaaatcctaacnnnnnnnntaaaactctatcatctaaacatctaaagaaaataactgtgaatccatgcaatgtaatcaa |
360 |
Q |
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|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3929828 |
ttttccaagagaaattagattcaaatcctaac-aacaaaataaaactctatcatctaaacatctaaagaaaataactgtgaatccatgcaatgtaatcaa |
3929926 |
T |
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| Q |
361 |
atcttctaagccctttcgcct |
381 |
Q |
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||||||||||||||||||||| |
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| T |
3929927 |
atcttctaagccctttcgcct |
3929947 |
T |
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